FFCP PHASE1:Hg19::chr18:29172879..29172882,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7276 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12405 | |||
|TSSclassifier=strong | |||
|UniProt=P02766 | |||
|association_with_transcript=1bp_to_M11714_5end | |||
|coexpression_cluster_id=C160 | |||
|description=CAGE_peak_5_at_TTR_5end | |||
|id=chr18:29172879..29172882,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;7.92e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,7.92e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001896!6.66e-31!3;UBERON:0005290!6.66e-31!3;UBERON:0010096!6.66e-31!3;UBERON:0005743!4.19e-12!86;UBERON:0002298!5.51e-12!8;UBERON:0002336!2.96e-11!1;UBERON:0001018!2.96e-11!1;UBERON:0002473!2.96e-11!1;UBERON:0005340!2.96e-11!1;UBERON:0002316!2.96e-11!1;UBERON:0003544!2.96e-11!1;UBERON:0001020!2.96e-11!1;UBERON:0005970!2.96e-11!1;UBERON:0002437!2.96e-11!1;UBERON:0000073!7.91e-11!94;UBERON:0001016!7.91e-11!94;UBERON:0007023!1.15e-10!115;UBERON:0000966!5.95e-09!5;UBERON:0005388!5.95e-09!5;UBERON:0001802!5.95e-09!5;UBERON:0001017!1.91e-08!82;UBERON:0004733!3.67e-08!12;UBERON:0002028!3.67e-08!12;UBERON:0007277!3.67e-08!12;UBERON:0003075!3.95e-08!86;UBERON:0007284!3.95e-08!86;UBERON:0000955!4.76e-08!69;UBERON:0006238!4.76e-08!69;UBERON:0002346!1.02e-07!90;UBERON:0004732!1.43e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;9.74e-88;3!UBERON:0005290;9.74e-88;3!UBERON:0002298;1.22e-44;6!UBERON:0004733;5.14e-23;12!UBERON:0002028;5.14e-23;12!UBERON:0004732;2.40e-21;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,9.74e-88,3;UBERON:0005290,9.74e-88,3;UBERON:0010096,9.74e-88,3;UBERON:0002298,1.22e-44,6;UBERON:0004733,5.14e-23,12;UBERON:0002028,5.14e-23,12;UBERON:0007277,5.14e-23,12;UBERON:0004732,2.40e-21,13;UBERON:0003076,1.13e-18,15;UBERON:0003057,1.13e-18,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.58727356552057,2.10765197920019,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672567444437648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@TTR | |||
}} |
Revision as of 18:57, 20 January 2014
Short description: | p5@TTR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TTR_5end |
Coexpression cluster: | C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral |
Association with transcript: | 1bp_to_M11714_5end |
EntrezGene: | TTR |
HGNC: | 12405 |
UniProt: | P02766 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 7.92e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 9.74e-88 | 3 |
myelencephalon | 9.74e-88 | 3 |
future myelencephalon | 9.74e-88 | 3 |
brainstem | 1.22e-44 | 6 |
segmental subdivision of hindbrain | 5.14e-23 | 12 |
hindbrain | 5.14e-23 | 12 |
presumptive hindbrain | 5.14e-23 | 12 |
segmental subdivision of nervous system | 2.40e-21 | 13 |
posterior neural tube | 1.13e-18 | 15 |
chordal neural plate | 1.13e-18 | 15 |