FFCP PHASE1:Hg19::chr19:11546443..11546485,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5589 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9411 | |||
|TSSclassifier=strong | |||
|UniProt=A2VCQ4 | |||
|association_with_transcript=0bp_to_uc002mrv.1_5end | |||
|coexpression_cluster_id=C345 | |||
|description=CAGE_peak_1_at_PRKCSH_5end | |||
|id=chr19:11546443..11546485,+ | |||
|ontology_enrichment_celltype=CL:0000012!6.50e-32!682;CL:0000548!1.06e-31!679;CL:0000004!1.06e-31!679;CL:0000255!1.06e-31!679;CL:0000144!1.20e-26!625;CL:0002371!6.28e-23!591;CL:0000055!5.64e-21!180;CL:0000003!2.63e-20!722;CL:0000220!7.06e-13!246;CL:0002321!8.22e-13!248;CL:0000222!1.12e-12!119;CL:0000063!3.76e-12!578;CL:0000183!4.80e-11!59;CL:0000187!3.47e-09!54;CL:0000057!6.32e-09!75;CL:0000066!7.40e-09!254;CL:0000680!1.10e-08!57;CL:0000056!1.10e-08!57;CL:0000355!1.10e-08!57;CL:0000192!2.15e-08!42;CL:0000514!2.15e-08!42;CL:0000393!7.37e-08!60;CL:0000211!7.37e-08!60;CL:1000449!7.78e-07!16 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.21e-13,250;CL:0000222,5.65e-13,121;CL:0000187,1.87e-09,55;CL:0000057,4.72e-09,76;CL:0000680,6.02e-09,58;CL:0000056,6.02e-09,58;CL:0000355,6.02e-09,58;CL:0000066,1.14e-08,253;CL:0000192,1.15e-08,43;CL:0000514,1.15e-08,43;CL:0000393,4.14e-08,61;CL:0000211,4.14e-08,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.25e-10!79;UBERON:0007798!5.25e-10!79;UBERON:0003914!1.07e-09!118;UBERON:0000055!6.79e-09!69;UBERON:0005256!1.50e-08!143;UBERON:0001637!4.59e-08!42;UBERON:0003509!4.59e-08!42;UBERON:0004572!4.59e-08!42;UBERON:0000486!1.02e-07!82;UBERON:0004290!1.36e-07!70;UBERON:0000490!1.88e-07!138;UBERON:0004872!2.20e-07!84;UBERON:0001981!3.30e-07!60;UBERON:0007500!3.30e-07!60;UBERON:0004537!3.30e-07!60;UBERON:0006965!3.30e-07!60;UBERON:0001134!4.07e-07!61;UBERON:0002036!4.07e-07!61;UBERON:0003082!4.07e-07!61;UBERON:0000353!7.62e-07!17;UBERON:0004211!7.78e-07!16;UBERON:0001285!7.78e-07!16;UBERON:0007684!7.78e-07!16;UBERON:0003220!7.78e-07!16;UBERON:0004208!7.78e-07!16 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,7.06e-10,78;UBERON:0007798,7.06e-10,78;UBERON:0007503,8.77e-10,78;UBERON:0003914,1.82e-09,117;UBERON:0003104,4.66e-09,160;UBERON:0009142,4.66e-09,160;UBERON:0000055,9.08e-09,68;UBERON:0000490,3.19e-08,148;UBERON:0001637,4.59e-08,42;UBERON:0003509,4.59e-08,42;UBERON:0004572,4.59e-08,42;UBERON:0000486,5.98e-08,83;UBERON:0002329,7.88e-08,71;UBERON:0003059,7.88e-08,71;UBERON:0007282,7.88e-08,71;UBERON:0004290,7.88e-08,71;UBERON:0009618,7.88e-08,71;UBERON:0007524,1.09e-07,73;UBERON:0002100,1.31e-07,199;UBERON:0005256,1.42e-07,122;UBERON:0001134,2.34e-07,62;UBERON:0002036,2.34e-07,62;UBERON:0003082,2.34e-07,62;UBERON:0003077,2.37e-07,72;UBERON:0007285,2.37e-07,72;UBERON:0004872,2.90e-07,83;UBERON:0007500,4.37e-07,59;UBERON:0001981,4.37e-07,59;UBERON:0004537,4.37e-07,59;UBERON:0006965,4.37e-07,59 | |||
|phase1_expression=175.137957616817,195.90197936025,188.174129468121,174.127539134447,216.329169702807,217.212292500992,222.903892788113,333.548093169367,409.016693760947,266.621321104137,547.773916858356,336.836595824726,369.537536498063,318.94589157804,295.606459149301,277.670285484583,277.239482891029,285.551245341463,253.237122572273,438.310966753365,410.857392165926,580.831598898897,170.024176355848,181.358613221572,185.677563960713,134.181940493402,122.329878280419,122.001711036203,212.416709498408,191.147040252412,203.58320216064,159.979293059333,293.675770808794,286.929111889427,146.567943497931,132.643893910764,271.580406384734,142.930815401224,186.105247252291,150.605544276801,146.88855110139,156.764534353186,146.560497983852,183.492577339811,188.937971844405,157.679639772081,195.937678111492,177.213359737407,165.383202057985,205.700060510338,183.923387287894,159.152540715018,223.739946798065,213.009945582663,215.328113685003,193.889609728883,184.211651289046,130.789067947039,225.889912569726,232.031686576016,203.309206004095,201.86899571427,185.700665245739,166.227652707751,218.817765925952,211.634688809795,167.53918497981,174.869071018693,195.034611489155,169.841676559401,213.100624926946,256.689512283333,156.015957008356,174.496866493664,151.586865875076,138.584364681036,165.460073678787,184.267047516528,156.064544682865,120.845403346289,145.209174355336,140.651398398768,131.997183345992,157.287920043494,162.780193457031,133.13982944075,193.391261738394,149.435634388166,172.532711796849,149.786439462052,220.285419045357,244.877907967681,226.688024278261,206.18727258328,177.120705902165,211.234035989612,136.713290229114,154.846240523171,154.81792874663,157.155305667237,163.612977850062,165.233284201422,198.72326297607,183.04738066234,134.340293808526,159.282870205624,171.14804189949,161.523154174076,157.892047937692,183.84157734691,205.328063214885,181.416731670143,169.491541694235,153.568435323495,159.939351421614,161.012575973242,120.714455484605,132.296566510813,168.258095192969,144.62869810314,141.936192940699,102.648820800424,162.771703723072,158.703397831479,131.177262879963,161.955640398108,137.949503482736,148.987383243077,173.301246867713,147.865716364338,229.178454335124,297.120480848711,338.835788885355,282.283978012346,318.850911164426,296.355977793845,147.127900204453,292.954191922187,216.579266122879,229.711655771216,240.315973656393,157.305869672753,438.247231815928,236.93125893925,98.337860277369,106.91565870175,118.066668940752,126.638521506137,157.870595375315,117.380570420143,249.645583652582,298.501404501825,274.588136771607,267.955964471981,307.493086741861,303.180082217954,244.106120914995,227.923581587348,215.23858892546,236.312752611857,341.599260908557,227.321359609835,448.097937658439,204.053009591957,446.38821328285,159.221415530514,179.174439355684,134.23288473612,252.972451818707,302.815745402233,218.926083996837,181.856976061767,217.156947923062,373.732602686152,247.492031944269,223.629483599648,241.779164164938,888.046177838327,249.686541067643,228.756460858061,283.952328641015,367.287979593151,195.440530231053,194.791631812769,195.17351231747,427.584733096931,312.287351068159,355.934254955537,260.341504076487,265.839868839713,273.341636729244,172.511278507691,157.987993703296,154.495887372473,181.90136658811,169.265689255616,260.690945906456,198.396477166103,296.967582063547,513.331008133047,801.259228125106,153.017527584246,176.542231539341,149.337558245975,214.66005661073,218.525798404701,305.584211816018,184.440729818194,633.60419325306,350.874789828906,327.010923489204,757.129835420947,271.131204426333,430.002061336155,319.004291752345,628.016732269752,246.905371078477,455.138094962138,295.84837423635,292.57936284205,678.778340891767,229.815536057247,246.541101219449,118.855424695428,135.554821933645,118.737102491048,199.305035815759,199.192241787192,219.838939909129,219.968758742616,235.667674717837,216.431573931967,323.850531922719,414.890405134411,313.566271470131,382.639172698351,449.009037598482,175.685598059168,216.294157370204,212.089706297464,188.161517481464,218.315202980591,209.035415436876,199.415504768883,227.224456615151,248.931410544315,325.52655548947,621.271057949265,419.805491558028,630.667371843975,195.20275362562,175.926071785295,236.906752579243,204.397415028983,178.94817808023,283.94472604406,218.183567392348,315.848926653911,151.597690396739,264.154834037285,276.611251208466,322.379783436669,281.446116949283,323.561760285439,307.610778897853,276.173014566934,278.71727857112,232.871082335148,373.766680234737,400.054551536211,130.741230232408,120.044188016429,144.320858582355,79.6737588887604,192.675501044092,144.043498798265,148.667147686728,173.508461292835,307.472908690499,91.1426990107495,174.071754044148,180.168132404931,157.378989131322,167.144981856527,235.06920466961,430.500955604179,467.697614368087,364.384310028362,224.575244064059,289.530707761536,253.242219310692,307.463433274979,288.169605498798,229.622172905395,254.53600832706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| |||
|short_description=p1@PRKCSH | |||
}} |
Revision as of 21:23, 20 January 2014
Short description: | p1@PRKCSH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRKCSH_5end |
Coexpression cluster: | C345_Mesenchymal_Fibroblast_Alveolar_Renal_Pericytes_Hepatic_Smooth |
Association with transcript: | 0bp_to_uc002mrv.1_5end |
EntrezGene: | PRKCSH |
HGNC: | 9411 |
UniProt: | A2VCQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.21e-13 | 250 |
mesodermal cell | 5.65e-13 | 121 |
muscle cell | 1.87e-09 | 55 |
fibroblast | 4.72e-09 | 76 |
muscle precursor cell | 6.02e-09 | 58 |
myoblast | 6.02e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.02e-09 | 58 |
epithelial cell | 1.14e-08 | 253 |
smooth muscle cell | 1.15e-08 | 43 |
smooth muscle myoblast | 1.15e-08 | 43 |
electrically responsive cell | 4.14e-08 | 61 |
electrically active cell | 4.14e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
vasculature | 7.06e-10 | 78 |
vascular system | 7.06e-10 | 78 |
epithelial vesicle | 8.77e-10 | 78 |
epithelial tube | 1.82e-09 | 117 |
mesenchyme | 4.66e-09 | 160 |
entire embryonic mesenchyme | 4.66e-09 | 160 |
vessel | 9.08e-09 | 68 |
unilaminar epithelium | 3.19e-08 | 148 |
artery | 4.59e-08 | 42 |
arterial blood vessel | 4.59e-08 | 42 |
arterial system | 4.59e-08 | 42 |
multilaminar epithelium | 5.98e-08 | 83 |
somite | 7.88e-08 | 71 |
presomitic mesoderm | 7.88e-08 | 71 |
presumptive segmental plate | 7.88e-08 | 71 |
dermomyotome | 7.88e-08 | 71 |
trunk paraxial mesoderm | 7.88e-08 | 71 |
dense mesenchyme tissue | 1.09e-07 | 73 |
trunk | 1.31e-07 | 199 |
trunk mesenchyme | 1.42e-07 | 122 |
skeletal muscle tissue | 2.34e-07 | 62 |
striated muscle tissue | 2.34e-07 | 62 |
myotome | 2.34e-07 | 62 |
paraxial mesoderm | 2.37e-07 | 72 |
presumptive paraxial mesoderm | 2.37e-07 | 72 |
splanchnic layer of lateral plate mesoderm | 2.90e-07 | 83 |
epithelial tube open at both ends | 4.37e-07 | 59 |
blood vessel | 4.37e-07 | 59 |
blood vasculature | 4.37e-07 | 59 |
vascular cord | 4.37e-07 | 59 |