FFCP PHASE1:Hg19::chr21:47546031..47546052,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-351bp_to_uc002zic.1_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_29_at_COL6A2_5end | |||
|id=chr21:47546031..47546052,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.31e-37!180;CL:0000057!2.60e-23!75;CL:0000680!2.67e-15!57;CL:0000056!2.67e-15!57;CL:0000355!2.67e-15!57;CL:0000393!9.98e-15!60;CL:0000211!9.98e-15!60;CL:0000048!1.42e-14!430;CL:0000187!1.46e-14!54;CL:0000183!4.51e-14!59;CL:0000723!1.24e-13!436;CL:0000034!4.94e-13!444;CL:0000192!4.23e-11!42;CL:0000514!4.23e-11!42;CL:0002620!2.17e-10!23;CL:0000359!6.64e-08!32;CL:0002570!1.57e-07!8;CL:0002371!1.86e-07!591;CL:0002320!6.04e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0002570;1.28e-12;8!CL:0002559;5.45e-10;5!CL:0000723;6.58e-10;61!CL:0000134;8.68e-10;55!CL:0000048;4.16e-09;58!CL:0000499;1.04e-08;28!CL:0000034;1.11e-07;69!CL:0002320;7.57e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,7.23e-15,427;CL:0000723,2.67e-14,433;CL:0000057,5.47e-14,76;CL:0000034,1.44e-13,441;CL:0002320,6.88e-13,361;CL:0002570,8.79e-13,8;CL:0000134,4.12e-10,354;CL:0002559,4.59e-10,5;CL:0000499,7.29e-09,28;CL:0000219,5.65e-08,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.78e-20!83;UBERON:0002329!2.78e-20!83;UBERON:0003077!2.78e-20!83;UBERON:0003059!2.78e-20!83;UBERON:0007282!2.78e-20!83;UBERON:0009618!2.78e-20!83;UBERON:0007285!2.78e-20!83;UBERON:0004290!4.17e-19!70;UBERON:0000486!1.86e-15!82;UBERON:0005256!1.89e-15!143;UBERON:0001134!3.87e-14!61;UBERON:0002036!3.87e-14!61;UBERON:0003082!3.87e-14!61;UBERON:0002385!4.34e-14!63;UBERON:0001015!4.34e-14!63;UBERON:0000383!4.34e-14!63;UBERON:0002199!2.33e-11!45;UBERON:0002416!2.33e-11!45;UBERON:0002100!2.96e-11!216;UBERON:0003102!1.27e-10!95;UBERON:0001013!7.29e-10!14;UBERON:0000475!2.97e-09!365;UBERON:0002097!2.84e-08!40;UBERON:0003104!4.10e-08!238;UBERON:0009142!4.10e-08!238;UBERON:0002384!1.57e-07!375;UBERON:0002067!3.74e-07!9;UBERON:0004016!3.74e-07!9;UBERON:0010083!3.74e-07!9;UBERON:0004573!8.69e-07!33;UBERON:0004571!8.69e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.12e-15;14!UBERON:0002073;5.45e-10;5!UBERON:0002072;2.16e-09;5!UBERON:0002384;9.92e-08;198!UBERON:0002199;1.00e-07;46!UBERON:0002416;1.00e-07;46!UBERON:0003102;1.32e-07;50!UBERON:0004905;2.41e-07;8!UBERON:0000982;2.41e-07;8!UBERON:0004770;2.41e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,1.50e-15,14;UBERON:0002384,1.59e-12,371;UBERON:0002199,5.31e-11,46;UBERON:0002416,5.31e-11,46;UBERON:0002073,4.59e-10,5;UBERON:0005086,4.59e-10,5;UBERON:0002072,2.45e-09,5;UBERON:0003102,3.62e-09,99;UBERON:0007524,1.61e-08,73;UBERON:0002329,3.35e-08,71;UBERON:0003059,3.35e-08,71;UBERON:0007282,3.35e-08,71;UBERON:0004290,3.35e-08,71;UBERON:0009618,3.35e-08,71;UBERON:0003077,5.36e-08,72;UBERON:0007285,5.36e-08,72;UBERON:0000486,1.27e-07,83;UBERON:0004905,1.65e-07,8;UBERON:0000982,1.65e-07,8;UBERON:0004770,1.65e-07,8;UBERON:0003104,2.95e-07,160;UBERON:0009142,2.95e-07,160;UBERON:0005256,3.92e-07,122;UBERON:0007503,6.77e-07,78 | |||
|phase1_expression=0.908391896352783,3.42560838225573,0.986680828671798,1.0007329835313,0,1.74467704820074,2.53299878168311,3.79031924056099,2.08948502559871,0,0,0,0,2.59909341216098,1.65698687863958,3.36162573225888,2.41077811209591,2.92124036154949,2.92759679274304,0.61560529038394,0.408001382488506,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,4.87613732627923,1.34140171940727,0,1.0843174571537,1.50401373190767,2.89693037921647,0,1.45990461090791,0,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0.529636723252875,2.86836620748814,1.06400514659507,0,0,1.2333377420858,0,0.404132016209064,0.817309515567294,0.756787138224657,1.15235184896,0,3.1216007683032,1.1409436430889,1.94283284717341,0.822041490506354,0.485618833104395,0.421352420106746,0.61246251376468,2.08818339430006,0.619954687054593,2.37600571456411,3.70900393917835,0.910161361938026,1.43723628363248,0.336672227908132,0.875829639103749,0,0,2.45190236639216,1.50238058906597,0.226864366320042,1.4351170855109,0.640672166455702,1.90738711043606,1.50045548042201,0.412210116953756,0.772921620136887,1.11670113798954,2.02531598689519,0.0974370051611986,0.757301322732344,0.920498986422993,0.484938170456436,1.06502877754984,0.604512589365842,0.339121184620975,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,4.69348596989448,8.36213219650751,2.76269842704961,4.64367928031979,3.60939740834793,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.057870056657,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0,0,1.3032332212413,1.03993478527958,0,0.231860809950154,0,0,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.719792448923265,0,0,0.112131084345361,0,0.66004457238855,0.258543431515556,3.57656445851882,8.45302752556,0.26593811658487,1.04007436911366,0,2.83698264046557,0.532844358032199,1.28680194292333,2.71310802695722,0,1.95441710576241,1.42156779497018,0,0,0,0.099972991182057,0,0,0,0.718874566474748,1.14861935834114,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0.431255149719035,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,1.47229790062968,3.00102312635806,0.542530047399471,1.45579603071565,1.60586089917446,0.473107245101804,0.819989904948992,0.601892199455438,11.3703752027992,5.17365356462525,1.32845119707087,0.368738337083406,1.99832313276591,1.37060810223918,1.37257369524342,0,0,0,0,0,0,1.24053903909388,0.306923946576125,3.36792113319688,1.02511319404561,0.511707249066704,0.482561763430822,0,3.08419387605311,2.48586415438378,0.410635780069046,5.19254429183621,2.90525946149898,0,0,0,0.574072240823034,2.36718518408732,3.67148361886388,0,0.0770153371044148,0.784349769176855,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,0,1.83674364755032,0.308097234229289,0.614014698904518,0.551346289938122,0.537101224341368,0.725083469571143,1.10794615640931,1.33548053470106,0,0,0,0,0.929691098594572,2.51849877464512,0,0.308033580176089,0.532306030317022,0,0.9266210955196,0,0.372158369359667,0.316379424718726,0.953150969619124,0.511795582622668,0.42793898803392,0.318203247925937,1.56989728039846,1.07923474549989,1.09814811894422,0.471249609382746,0.404364963146632,0,0.421258456238981,0,1.46228093778771,1.05650146756755,0.818999468447914,1.41405431953713,0,1.10273068709225,1.32687795048244,0.876901770507525,1.15755106853338,1.31178950409327,0,0.30982349809975,0.281695602532241,0.430234056612155,0.392996164052485,0,0.354761064070598,2.11107635297664,3.29294892959902,0,1.39973888097993,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0.47748896947538,0,0,0,0.140669416410513,0,0,0,0.796991953004279,0.276283915531148,0,0,0,2.48831670129446,0.0898683511473268,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0.110579259931225,0,0,0,0,0.769502585037971,0.113942055847001,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,1.19472429772959,0,0,0,0,0,0.873633341210151,0.171986032471617,0,0,0,0.193978032976839,0,0.451961481561065,0.137041924646751,0,0,0,0,1.06726497369676,0.599428828746391,0,0,0,0,0.124252535565433,0,0,0,0.101998217636322,0.577901179803038,0,0,0,0,0,1.11712960508902,0.229160424011684,0,0.199679000498991,0.858452096273142,0,0.134366944973453,0.360299883542404,0,0,0,0,0.0984274815147488,0,0,0,0,0.275078873194468,0.83088067605837,0,0,0,0,0.157611414598396,0,0.105600336519406,0,0,0,0,0,1.08599920350743,0,0.979762080328227,0,0,0.170388021785422,0.453248366080503,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17632909849086,0,0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| |||
|short_description=p29@COL6A2 | |||
}} |
Revision as of 14:24, 21 January 2014
Short description: | p29@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -351bp_to_uc002zic.1_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 7.23e-15 | 427 |
somatic stem cell | 2.67e-14 | 433 |
fibroblast | 5.47e-14 | 76 |
stem cell | 1.44e-13 | 441 |
connective tissue cell | 6.88e-13 | 361 |
mesenchymal stem cell of adipose | 8.79e-13 | 8 |
mesenchymal cell | 4.12e-10 | 354 |
hair follicle cell | 4.59e-10 | 5 |
stromal cell | 7.29e-09 | 28 |
motile cell | 5.65e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 1.50e-15 | 14 |
connective tissue | 1.59e-12 | 371 |
integument | 5.31e-11 | 46 |
integumental system | 5.31e-11 | 46 |
hair follicle | 4.59e-10 | 5 |
hair follicle placode | 4.59e-10 | 5 |
hypodermis | 2.45e-09 | 5 |
surface structure | 3.62e-09 | 99 |
dense mesenchyme tissue | 1.61e-08 | 73 |
somite | 3.35e-08 | 71 |
presomitic mesoderm | 3.35e-08 | 71 |
presumptive segmental plate | 3.35e-08 | 71 |
dermomyotome | 3.35e-08 | 71 |
trunk paraxial mesoderm | 3.35e-08 | 71 |
paraxial mesoderm | 5.36e-08 | 72 |
presumptive paraxial mesoderm | 5.36e-08 | 72 |
multilaminar epithelium | 1.27e-07 | 83 |
articulation | 1.65e-07 | 8 |
skeletal joint | 1.65e-07 | 8 |
articular system | 1.65e-07 | 8 |
mesenchyme | 2.95e-07 | 160 |
entire embryonic mesenchyme | 2.95e-07 | 160 |
trunk mesenchyme | 3.92e-07 | 122 |
epithelial vesicle | 6.77e-07 | 78 |