FFCP PHASE1:Hg19::chr3:42977846..42977889,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100506243 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=38708 | |||
|TSSclassifier=strong | |||
|UniProt=C9JBD0 | |||
|association_with_transcript=0bp_to_ENST00000383748,ENST00000443313,uc003cmm.3_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_KRBOX1_5end | |||
|id=chr3:42977846..42977889,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.95e-15!180;CL:0000183!1.17e-12!59;CL:0000187!8.73e-12!54;CL:0000680!1.51e-11!57;CL:0000056!1.51e-11!57;CL:0000355!1.51e-11!57;CL:0000393!3.06e-11!60;CL:0000211!3.06e-11!60;CL:0000057!2.77e-09!75;CL:0000192!2.64e-08!42;CL:0000514!2.64e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000187;9.95e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.34e-12,55;CL:0000393,5.03e-12,61;CL:0000211,5.03e-12,61;CL:0000680,9.03e-12,58;CL:0000056,9.03e-12,58;CL:0000355,9.03e-12,58;CL:0000057,4.19e-09,76;CL:0000192,1.16e-08,43;CL:0000514,1.16e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000355;7.22e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.02e-22!365;UBERON:0000119!9.86e-20!312;UBERON:0000483!5.20e-19!309;UBERON:0000481!1.23e-17!347;UBERON:0000914!9.39e-17!83;UBERON:0002329!9.39e-17!83;UBERON:0003077!9.39e-17!83;UBERON:0003059!9.39e-17!83;UBERON:0007282!9.39e-17!83;UBERON:0009618!9.39e-17!83;UBERON:0007285!9.39e-17!83;UBERON:0005256!1.41e-14!143;UBERON:0004290!6.84e-14!70;UBERON:0004121!1.50e-13!169;UBERON:0000486!3.65e-13!82;UBERON:0003075!7.16e-13!86;UBERON:0007284!7.16e-13!86;UBERON:0000924!3.32e-12!173;UBERON:0006601!3.32e-12!173;UBERON:0002385!1.49e-11!63;UBERON:0001015!1.49e-11!63;UBERON:0000383!1.49e-11!63;UBERON:0000468!1.75e-11!659;UBERON:0001134!1.80e-11!61;UBERON:0002036!1.80e-11!61;UBERON:0003082!1.80e-11!61;UBERON:0000064!2.04e-11!219;UBERON:0000480!3.50e-11!626;UBERON:0000467!3.56e-11!625;UBERON:0002346!5.23e-11!90;UBERON:0000033!7.64e-11!123;UBERON:0000153!3.29e-10!129;UBERON:0007811!3.29e-10!129;UBERON:0002616!5.52e-10!59;UBERON:0002050!6.51e-10!605;UBERON:0005423!6.51e-10!605;UBERON:0001049!7.69e-10!57;UBERON:0005068!7.69e-10!57;UBERON:0006241!7.69e-10!57;UBERON:0007135!7.69e-10!57;UBERON:0003056!8.94e-10!61;UBERON:0000923!1.27e-09!604;UBERON:0005291!1.27e-09!604;UBERON:0006598!1.27e-09!604;UBERON:0002532!1.27e-09!604;UBERON:0002100!1.46e-09!216;UBERON:0000922!2.52e-09!612;UBERON:0005743!7.43e-09!86;UBERON:0000025!2.53e-08!194;UBERON:0000073!3.22e-08!94;UBERON:0001016!3.22e-08!94;UBERON:0001017!4.43e-08!82;UBERON:0000062!1.17e-07!511;UBERON:0000477!1.50e-07!286;UBERON:0000479!1.70e-07!787;UBERON:0004111!2.22e-07!241;UBERON:0002780!3.13e-07!41;UBERON:0001890!3.13e-07!41;UBERON:0006240!3.13e-07!41;UBERON:0003080!3.78e-07!42;UBERON:0000955!6.06e-07!69;UBERON:0006238!6.06e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.52e-20,309;UBERON:0000483,1.45e-19,306;UBERON:0010314,3.00e-19,132;UBERON:0010371,1.32e-15,104;UBERON:0007503,1.83e-14,78;UBERON:0003075,5.63e-14,82;UBERON:0007284,5.63e-14,82;UBERON:0007524,8.12e-14,73;UBERON:0003077,9.28e-14,72;UBERON:0007285,9.28e-14,72;UBERON:0002329,1.10e-13,71;UBERON:0003059,1.10e-13,71;UBERON:0007282,1.10e-13,71;UBERON:0004290,1.10e-13,71;UBERON:0009618,1.10e-13,71;UBERON:0004121,1.18e-13,171;UBERON:0000924,1.18e-13,171;UBERON:0006601,1.18e-13,171;UBERON:0000486,3.11e-13,83;UBERON:0002346,3.73e-12,86;UBERON:0003104,6.62e-12,160;UBERON:0009142,6.62e-12,160;UBERON:0002385,2.96e-11,64;UBERON:0001015,2.96e-11,64;UBERON:0000383,2.96e-11,64;UBERON:0001134,3.73e-11,62;UBERON:0002036,3.73e-11,62;UBERON:0003082,3.73e-11,62;UBERON:0003056,7.87e-11,61;UBERON:0001049,3.41e-10,56;UBERON:0005068,3.41e-10,56;UBERON:0006241,3.41e-10,56;UBERON:0007135,3.41e-10,56;UBERON:0005256,4.48e-10,122;UBERON:0000073,5.61e-10,53;UBERON:0002616,5.61e-10,53;UBERON:0005423,1.86e-09,581;UBERON:0001017,1.92e-08,81;UBERON:0000922,2.78e-08,592;UBERON:0002100,3.38e-08,199;UBERON:0001016,4.74e-08,89;UBERON:0002050,7.53e-08,564;UBERON:0000025,9.91e-08,192;UBERON:0002780,1.29e-07,41;UBERON:0001890,1.29e-07,41;UBERON:0003080,1.29e-07,41;UBERON:0006240,1.29e-07,41;UBERON:0003102,1.96e-07,99;UBERON:0000955,2.69e-07,68;UBERON:0006238,2.69e-07,68;UBERON:0000923,5.58e-07,560;UBERON:0010316,5.58e-07,560;UBERON:0005291,5.58e-07,560;UBERON:0006598,5.58e-07,560;UBERON:0010317,5.58e-07,560;UBERON:0002532,5.58e-07,560;UBERON:0001893,7.15e-07,34;UBERON:0001869,9.65e-07,32 | |||
|phase1_expression=1.99846217197612,6.20891519283851,4.36958652697511,3.00219895059391,4.02264984984559,0.872338524100369,2.53299878168311,3.79031924056099,4.17897005119742,6.88055022204225,4.18680700783456,19.2228407474552,9.23184423799587,2.10402800032079,3.31397375727916,4.03395087871065,6.62963980826375,10.2243412654232,4.39139518911456,5.41732655537867,6.12002073732759,2.5076377718247,12.0219114595044,12.0449494064138,6.02604670055053,0,0,0,0,0,0.154816123316076,3.67768489791571,1.204823675113,0,0,0,2.05520307534393,1.10799081706375,0,0,0.223915474239924,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0,0.612167784741805,0.320929027076094,0,0,0,0.426224750532694,0.290209238628584,0,0,0.502497330513487,0,0,0.605399502633369,0,0,0.422510572623884,0.850417199860174,0.419317291016752,0.336985893439485,0.150176892841506,0,1.14005097496499,0.79566670879636,0.365328307529268,0,0.546138611262131,0,0,0.400395987036012,0,0.661044872784862,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,1.31692042387539,0,0,0,0,0,0.473447805734733,0,0,0.294605907474837,0,0,0,0,0,0,0,0.14828656316206,0.535081656179426,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0.201606743224732,0,0,4.87613732627923,4.69490601792545,7.79961627245535,7.95166135246046,4.01070328508712,1.73815822752988,4.7717156823066,2.91980922181582,4.63220604103932,4.43458794925128,6.14843499851882,61.2327177951807,10.9288586487763,4.82019775619758,0.324547393654683,0.348259474598534,0.531831842075461,0.476981248610684,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,0,0,1.04497483268405,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.357198913136319,1.34717623575702,0.563057402416611,0,0,0,0,0,12.210633459991,1.49091585508596,11.9032680964705,0.397227542439656,6.02356903572509,7.4480360261655,2.80338800071154,1.06748995729705,1.48000529050296,0.933633106199299,3.3677668017422,1.30769522490767,2.27036141467397,0.576175924479999,18.0427502512023,7.49184184392769,2.2818872861778,5.97794722207204,7.63324241184472,12.9498355494505,9.69110566245515,4.08308342509786,6.1417158655884,3.51307655997603,1.18800285728205,3.70900393917835,5.46096817162816,4.31170885089743,12.1202002046928,6.00568895385428,2.49357703935765,7.46261955497424,6.12975591598039,5.25833206173089,9.52830338544177,3.04962380671065,2.56268866582281,6.35795703478686,0.300091096084402,0.412210116953756,4.63752972082133,5.02515512095292,5.40084263172052,4.38466523225394,3.02920529092937,4.97069452668416,3.87950536365149,7.10019185033229,9.77295352808111,9.49539316938731,2.51239109112286,3.54569956768085,5.73609190778008,0,0,0,0.10366105501537,0,0,3.12899064659632,6.43240938192885,4.14404764057442,4.64367928031979,3.60939740834793,0,0,0,0,0,0,0,0,0,0.738155454624648,2.80483547606892,9.4662022606222,7.3504355692771,0,0,1.18157981336281,0,0,8.7499583252248,4.82901255797952,3.37205259772859,15.2804038065679,12.6846169867186,15.9646069602059,4.15973914111831,1.44331342025273,2.08674728955138,5.87043471179108,0.144366447761074,0,0,0,0,0.246217006087397,0,0.445893486866185,16.8720901176199,2.51973192298289,16.871236571844,20.8671357897637,23.8319829581449,0,0,0,0,0,0,0.444485260045183,1.14596527667483,0,1.71072446022705,1.02827492703324,0,0,6.05507855464948,3.48768055066624,6.67378400970645,7.23921608243556,0,5.917119267892,3.45719551560332,3.12022310734098,20.5765899409714,9.92943924162948,18.649552531127,5.29018576535146,4.34097284313154,18.1112874091769,7.81766842304964,5.68627117988073,19.0068449504023,3.91871190177462,5.22920075160176,3.89894665610022,0,0,0,0,0,1.42636905040718,0.723906533337896,1.02738161275192,4.1184021545176,0,0,0.215627574859517,0.256686072559497,10.1637849688985,5.20559415430487,9.27946575333234,6.8681668787083,14.6725912880228,0,0,0,2.57652132610194,5.00170521059677,1.35632511849868,4.99130067673937,3.56857977594324,2.99634588564476,7.26276772954822,1.50473049863859,15.9185252839189,1.03473071292505,10.627609576567,3.87175253937577,9.99161566382953,5.48243240895674,4.80400793335198,0.206768026122887,0,0,31.8283950018572,9.98612637062982,14.8171243731543,3.47350930946288,10.2819522103002,8.70046292742528,2.81906128362542,2.04682899626681,5.46903331888265,2.96836132889982,16.0378081554762,7.10246901252508,10.0195130336847,3.11552657510173,10.9237755752362,0,3.40860999515584,1.47329582297434,5.39627906373652,10.0150142403694,3.14698595902618,6.31679458070376,6.7773496651885,10.980896768476,14.6139224653261,5.06647818685803,0,1.02056223165909,10.1480480568005,4.62681758070868,5.41892875087706,6.52196706011309,8.15604073744123,4.15538004464362,9.40273969833149,0,0,3.59030175162945,7.21632220539353,3.90454073597164,0.721287081534056,5.95201521319232,2.55779449753823,11.4853107599234,6.50060246036521,4.82051789532479,3.67348729510063,15.7129589456937,13.9688344000778,16.9538984155973,13.1052698739294,9.1360517165964,8.77834262385839,2.04773681987496,1.98341898433174,3.45942121257191,5.48734663726712,0.91042002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| |||
|short_description=p1@KRBOX1 | |||
}} |
Revision as of 18:28, 21 January 2014
Short description: | p1@KRBOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRBOX1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000383748, ENST00000443313, uc003cmm.3_5end |
EntrezGene: | KRBOX1 |
HGNC: | 38708 |
UniProt: | C9JBD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.34e-12 | 55 |
electrically responsive cell | 5.03e-12 | 61 |
electrically active cell | 5.03e-12 | 61 |
muscle precursor cell | 9.03e-12 | 58 |
myoblast | 9.03e-12 | 58 |
multi-potent skeletal muscle stem cell | 9.03e-12 | 58 |
fibroblast | 4.19e-09 | 76 |
smooth muscle cell | 1.16e-08 | 43 |
smooth muscle myoblast | 1.16e-08 | 43 |