FFCP PHASE1:Hg19::chr3:99357430..99357445,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1295 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2215 | |||
|TSSclassifier=weak | |||
|UniProt=P27658 | |||
|association_with_transcript=-8bp_to_ENST00000273342,NM_001850,NM_020351,uc003dtg.1,uc003dth.1,uc010hpe.1_5end | |||
|coexpression_cluster_id=C1517 | |||
|description=CAGE_peak_1_at_COL8A1_5end | |||
|id=chr3:99357430..99357445,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.05e-34!180;CL:0000222!5.93e-21!119;CL:0000057!2.22e-20!75;CL:0000680!7.85e-14!57;CL:0000056!7.85e-14!57;CL:0000355!7.85e-14!57;CL:0000220!2.55e-13!246;CL:0000183!4.40e-13!59;CL:0002321!7.99e-13!248;CL:0000187!2.00e-12!54;CL:0000192!9.13e-12!42;CL:0000514!9.13e-12!42;CL:0000393!9.68e-11!60;CL:0000211!9.68e-11!60;CL:0000359!5.22e-10!32;CL:0002620!2.74e-08!23;CL:0000213!2.34e-07!57;CL:0000215!2.34e-07!57;CL:0000136!5.30e-07!15;CL:0002139!7.64e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.42e-09;32!CL:0000057;8.21e-09;73!CL:0000192;8.28e-09;43!CL:0002620;1.90e-08;23!CL:0002320;8.79e-08;188!CL:0000134;1.82e-07;55!CL:0000187;2.84e-07;55!CL:0002139;5.88e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,6.57e-22,121;CL:0000057,1.61e-21,76;CL:0000680,2.77e-14,58;CL:0000056,2.77e-14,58;CL:0000355,2.77e-14,58;CL:0000187,7.61e-13,55;CL:0000192,3.70e-12,43;CL:0000514,3.70e-12,43;CL:0002321,5.25e-12,250;CL:0000393,1.71e-10,61;CL:0000211,1.71e-10,61;CL:0000359,3.29e-10,32;CL:0002620,1.89e-08,23;CL:0000213,9.63e-08,58;CL:0000215,9.63e-08,58;CL:0002139,5.71e-07,24;CL:0000136,8.42e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;8.28e-09;43!CL:0000355;1.16e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.13e-22!365;UBERON:0002049!6.48e-21!79;UBERON:0007798!6.48e-21!79;UBERON:0000477!4.90e-19!286;UBERON:0000119!1.32e-18!312;UBERON:0000483!6.14e-18!309;UBERON:0000468!1.83e-16!659;UBERON:0000914!1.97e-16!83;UBERON:0002329!1.97e-16!83;UBERON:0003077!1.97e-16!83;UBERON:0003059!1.97e-16!83;UBERON:0007282!1.97e-16!83;UBERON:0009618!1.97e-16!83;UBERON:0007285!1.97e-16!83;UBERON:0003914!2.99e-16!118;UBERON:0000481!3.95e-16!347;UBERON:0000055!4.42e-16!69;UBERON:0004872!9.49e-16!84;UBERON:0005256!2.85e-15!143;UBERON:0001981!1.14e-14!60;UBERON:0007500!1.14e-14!60;UBERON:0004537!1.14e-14!60;UBERON:0006965!1.14e-14!60;UBERON:0001009!1.46e-14!113;UBERON:0004535!1.90e-14!110;UBERON:0002100!5.25e-14!216;UBERON:0004290!8.57e-14!70;UBERON:0004111!1.67e-13!241;UBERON:0000490!2.48e-13!138;UBERON:0001134!2.89e-13!61;UBERON:0002036!2.89e-13!61;UBERON:0003082!2.89e-13!61;UBERON:0002385!5.57e-13!63;UBERON:0001015!5.57e-13!63;UBERON:0000383!5.57e-13!63;UBERON:0000467!7.16e-13!625;UBERON:0000480!1.29e-12!626;UBERON:0000486!1.37e-12!82;UBERON:0001637!8.34e-12!42;UBERON:0003509!8.34e-12!42;UBERON:0004572!8.34e-12!42;UBERON:0000025!6.42e-11!194;UBERON:0003104!1.04e-10!238;UBERON:0009142!1.04e-10!238;UBERON:0003102!8.38e-10!95;UBERON:0004573!1.05e-08!33;UBERON:0004571!1.05e-08!33;UBERON:0002199!2.08e-08!45;UBERON:0002416!2.08e-08!45;UBERON:0002097!4.27e-08!40;UBERON:0002050!3.72e-07!605;UBERON:0005423!3.72e-07!605;UBERON:0000923!3.98e-07!604;UBERON:0005291!3.98e-07!604;UBERON:0006598!3.98e-07!604;UBERON:0002532!3.98e-07!604;UBERON:0000922!5.32e-07!612;UBERON:0003103!6.06e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.82e-09;42!UBERON:0003509;2.82e-09;42!UBERON:0004572;2.82e-09;42!UBERON:0002049;3.35e-09;75!UBERON:0007798;3.35e-09;75!UBERON:0000055;2.06e-08;65!UBERON:0007500;2.71e-08;56!UBERON:0001981;2.71e-08;56!UBERON:0004537;2.71e-08;56!UBERON:0004573;3.32e-08;33!UBERON:0004571;3.32e-08;33!UBERON:0003914;1.53e-07;74!UBERON:0002384;2.08e-07;198!UBERON:0002097;6.48e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.35e-21,78;UBERON:0007798,8.35e-21,78;UBERON:0000119,1.42e-17,309;UBERON:0000483,6.45e-17,306;UBERON:0003914,2.09e-16,117;UBERON:0000055,6.11e-16,68;UBERON:0007503,6.75e-16,78;UBERON:0004872,1.14e-15,83;UBERON:0001009,5.24e-15,112;UBERON:0004535,6.80e-15,109;UBERON:0007500,1.93e-14,59;UBERON:0001981,1.93e-14,59;UBERON:0004537,1.93e-14,59;UBERON:0006965,1.93e-14,59;UBERON:0007524,2.68e-14,73;UBERON:0002329,2.98e-14,71;UBERON:0003059,2.98e-14,71;UBERON:0007282,2.98e-14,71;UBERON:0004290,2.98e-14,71;UBERON:0009618,2.98e-14,71;UBERON:0000490,3.49e-14,148;UBERON:0003104,3.74e-14,160;UBERON:0009142,3.74e-14,160;UBERON:0003077,4.45e-14,72;UBERON:0007285,4.45e-14,72;UBERON:0001134,1.04e-13,62;UBERON:0002036,1.04e-13,62;UBERON:0003082,1.04e-13,62;UBERON:0002385,2.04e-13,64;UBERON:0001015,2.04e-13,64;UBERON:0000383,2.04e-13,64;UBERON:0000486,1.29e-12,83;UBERON:0004111,3.01e-12,240;UBERON:0005256,4.61e-12,122;UBERON:0001637,4.76e-12,42;UBERON:0003509,4.76e-12,42;UBERON:0004572,4.76e-12,42;UBERON:0002100,5.56e-11,199;UBERON:0003102,6.73e-10,99;UBERON:0000025,1.28e-09,192;UBERON:0004573,7.11e-09,33;UBERON:0004571,7.11e-09,33;UBERON:0002199,1.34e-08,46;UBERON:0002416,1.34e-08,46;UBERON:0002097,1.67e-08,41;UBERON:0001048,7.38e-07,160 | |||
|phase1_expression=1390.74799331611,1141.15579233894,1126.6485519391,2374.73936991978,1181.31817257132,2244.52702251025,516.731751463354,22.1101955699391,0.522371256399677,33.9112832372082,95.5987600122226,0.218441372130172,2.90143676051299,70.2992884813065,105.715762857205,135.809679583259,101.252680708028,108.816203467719,82.9485757943862,117.949973637563,166.260563364066,126.008798034191,46.3702299152312,41.0623275218653,76.0788395944505,0.0764134057479513,0,0,0,0,0.154816123316076,0.919421224478927,81.6268039889058,33.6476149251777,0,0,0,6.64794490238253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,56.0755792522112,9.38981203585091,259.049550294992,131.202412315598,352.941889087666,62.8633892289975,130.42689531638,390.767800853017,215.161243865418,201.773751690933,369.520943410981,15.5210204464789,1.45718115317017,2.22470665670658,0,0,0,0,0,0,159.606213115464,21.5058648776531,137.814779138215,85.9268071724495,140.112811694109,153.790985444498,117.664166160224,21.965424529393,85.3839030448105,207.192059301331,123.265771035399,125.444897443555,86.397968372052,36.7663080345869,425.324522637924,206.907470434213,113.16280380359,85.4721136868416,9.19899824795299,2.84779697870439,33.1595156514037,0,0,1.74437620857014,398.07453330795,54.4511200157693,140.750959204452,153.457592100615,42.9148742460012,232.681204059057,88.6016664556551,106.313713367796,58.5076746551561,115.312335291653,80.0963325255948,330.86733683182,65.1078794662399,16.6368216601996,3.1216007683032,11.409436430889,17.6349443051125,27.0099346880659,10.5217413839285,15.8709411573541,147.399311646033,63.1368390982487,63.44202964192,1087.02261441308,596.655100349158,35.496293115583,63.9570146216452,85.1780736607575,102.597186295011,186.464149720855,217.293922336015,669.369346025059,431.934419356466,294.129650933935,1659.71290939335,1806.48195201626,719.720736337872,564.171260638676,715.699815560958,3217.67270462986,1856.14340819495,347.341691752526,339.470525981616,1002.66695129762,1335.64402929976,80.8230284094059,5203.37559751602,1716.61424960253,34.5903608313395,8.69673839234836,6.81865301477087,17.4950803187292,0.121973706129595,0,1.2781333715647,1.7622379352613,1.26160425437814,0,359.833924358577,315.188059714514,74.5928575303395,569.315079767206,254.101577547694,23.3064396078492,19.0500699788255,28.1982904963674,24.1543800283943,18.0839938596697,27.048850578665,15.5056004384189,16.2863816054037,16.1593805917484,3.69077727312324,105.181330352584,54.7393435070762,72.0342685789156,1.26755034821831,0,0,0,0.491953754172454,184.435396070915,3.62175941848464,4.49607013030478,25.1322431029077,47.1275185856916,16.6162235708266,49.9168696934198,300.209191412568,53.3279862885353,818.925642294856,307.067434387804,242.604408590144,213.08465050275,0,0,0.246217006087397,0,0,7.49870671894216,18.9819804864711,30.3398708098707,51.943943167652,24.7038847736868,4.98397482914775,0.985326475791887,0,0.414656231081544,0.576479813667846,0.25248486685276,1.65094525159639,0.381988425558278,0,3.4214489204541,5.14137463516618,0,0,53.9350515701185,398.031542844785,30.4353886156943,187.961074711809,64.3781602533388,4.22651376278,235.089295061026,130.009296139208,125.774406014187,190.077836911193,180.367815193899,128.680194292333,213.250290918837,352.346864142169,12.0522388188682,138.958251958335,338.955401615508,497.374972148317,365.172519153523,428.18432123275,0,0,0,776.384531792728,791.398737897045,104.124940679724,731.290379977943,576.361084753825,161.512988842386,0,0,0,0,4.31960861178188,0,5.41302168944387,3.51784157202132,8.93114252314428,0,0,0,140.236375034977,58.0197804429225,99.2829986741032,175.943348855063,99.7418047376134,148.082567716865,118.429970557633,1033.44890646499,757.26698850643,140.723376957807,251.74150184493,213.130758834209,80.1935761540405,26.2373551000072,16.4708843429211,0,0,0,0,4.99306318531491,6.65258645325297,648.553809638283,3953.0269699272,733.645486848054,217.836553734692,1326.85689682996,431.410216507155,1233.35413215788,49.8097310982577,39.9513881954536,71.1221171079587,129.813607295905,40.2087909471459,0,15.6395046836562,0.276242966807689,127.558851910878,58.0870825941427,45.5001719909202,27.0719767744447,31.7303188870189,65.8853806108558,71.6082200800977,33.2487631012558,35.2573490619779,30.2766795392198,110.9807808765,97.1631691948823,198.061845844556,127.930892332988,53.014264793368,37.3984204017926,69.1772992091531,0,0,166.436131200537,133.173946154081,100.54192395127,33.2822467622143,3.11336180382368,1.98022799809411,140.120791271066,20.1518676271322,472.410753741829,43.7918353863313,7.70243085573222,8.13569476048487,28.6700070767824,47.0500672523038,21.3174540053916,14.4033000333211,139.691263929731,86.1134409030696,19.0268166691455,233.020813015111,7.58683356416624,6.507837690162,290.571796124681,47.3985343709208,81.3208651664874,69.1997839412128,5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| |||
|short_description=p1@COL8A1 | |||
}} |
Revision as of 20:08, 21 January 2014
Short description: | p1@COL8A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL8A1_5end |
Coexpression cluster: | C1517_Fibroblast_Preadipocyte_Adipocyte_basal_bone_Osteoblast_pleomorphic |
Association with transcript: | -8bp_to_ENST00000273342, NM_001850, NM_020351, uc003dtg.1, uc003dth.1, uc010hpe.1_5end |
EntrezGene: | COL8A1 |
HGNC: | 2215 |
UniProt: | P27658 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 6.57e-22 | 121 |
fibroblast | 1.61e-21 | 76 |
muscle precursor cell | 2.77e-14 | 58 |
myoblast | 2.77e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.77e-14 | 58 |
muscle cell | 7.61e-13 | 55 |
smooth muscle cell | 3.70e-12 | 43 |
smooth muscle myoblast | 3.70e-12 | 43 |
embryonic cell | 5.25e-12 | 250 |
electrically responsive cell | 1.71e-10 | 61 |
electrically active cell | 1.71e-10 | 61 |
vascular associated smooth muscle cell | 3.29e-10 | 32 |
skin fibroblast | 1.89e-08 | 23 |
lining cell | 9.63e-08 | 58 |
barrier cell | 9.63e-08 | 58 |
endothelial cell of vascular tree | 5.71e-07 | 24 |
fat cell | 8.42e-07 | 15 |