FFCP PHASE1:Hg19::chr3:99463740..99463765,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=1295 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2215 | |||
|TSSclassifier=strong | |||
|UniProt=A1KY36 | |||
|association_with_transcript=0bp_to_uc003dti.1_5end | |||
|coexpression_cluster_id=C1517 | |||
|description=CAGE_peak_5_at_COL8A1_5end | |||
|id=chr3:99463740..99463765,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.29e-16!180;CL:0000057!3.30e-16!75;CL:0002620!3.08e-08!23;CL:0000136!9.06e-08!15;CL:0002371!4.41e-07!591;CL:0000144!4.87e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.23e-14;13!CL:0002620;3.67e-13;23!CL:0002617;1.46e-11;2!CL:0002615;2.44e-08;3!CL:0002580;4.22e-08;3!CL:0000135;1.23e-07;3!CL:0002579;1.23e-07;3!CL:0000515;1.23e-07;3!CL:0000388;1.23e-07;3!CL:0002334;4.46e-07;12!CL:0002616;5.57e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,8.35e-17,15;CL:0000057,7.71e-16,76;CL:0002620,3.53e-13,23;CL:0002617,8.37e-12,2;CL:0002615,2.49e-08,3;CL:0002580,4.09e-08,3;CL:0000135,9.72e-08,3;CL:0000388,9.72e-08,3;CL:0002579,1.15e-07,3;CL:0000134,1.20e-07,354;CL:0002320,2.24e-07,361;CL:0000048,3.21e-07,427;CL:0002334,4.25e-07,12;CL:0000723,5.04e-07,433;CL:0002616,5.58e-07,1;CL:0000034,9.04e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!7.38e-07!5;DOID:450!7.38e-07!5;DOID:66!7.38e-07!5;DOID:423!7.38e-07!5;DOID:0080000!7.38e-07!5;DOID:11722!7.38e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:2513;7.97e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,7.77e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!3.46e-08!6;UBERON:0002358!3.46e-08!6;UBERON:0003684!3.46e-08!6;UBERON:0001178!3.46e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.70e-14;6!UBERON:0002358;2.70e-14;6!UBERON:0003684;2.70e-14;6!UBERON:0001178;2.70e-14;6!UBERON:0002097;3.02e-10;41!UBERON:0004457;1.45e-09;9!UBERON:0000042;1.45e-09;9!UBERON:0002199;7.76e-09;46!UBERON:0002416;7.76e-09;46!UBERON:0000310;1.10e-08;10!UBERON:0001443;6.71e-08;11!UBERON:0007846;1.23e-07;3!UBERON:0000043;1.23e-07;3!UBERON:0007845;1.23e-07;3!UBERON:0003102;1.33e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.58e-14,6;UBERON:0002358,2.58e-14,6;UBERON:0003684,2.58e-14,6;UBERON:0001178,2.58e-14,6;UBERON:0002199,7.13e-14,46;UBERON:0002416,7.13e-14,46;UBERON:0002097,3.80e-13,41;UBERON:0000310,8.75e-09,10;UBERON:0001443,5.45e-08,11;UBERON:0002384,9.07e-08,371;UBERON:0007846,9.72e-08,3;UBERON:0000043,9.72e-08,3;UBERON:0007845,9.72e-08,3;UBERON:0003102,2.10e-07,99;UBERON:0004457,3.38e-07,12;UBERON:0000042,3.38e-07,12 | |||
|phase1_expression=1.99846217197612,4.28201047781966,0.704772020479856,6.00439790118782,3.5756887554183,8.72338524100369,7.59899634504932,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0.626909442956176,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0,0,0.973269740605272,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.835979866147242,0,0,0,0.402829317109147,0,0,0,2.43042584364528,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,1.12135520028461,0,0.24666754841716,0.622422070799533,0.134710672069688,0,0.605429710579726,0,0,0,0,0,0.117434498643765,0,0,0,0,0.413303124703062,2.37600571456411,0.494533858557114,0,0,0.336672227908132,0.250237039743928,0.554128230968366,0,2.75839016219118,0.45071417671979,0.113432183160021,1.07633781413317,2.34913127700424,0.847727604638247,0.300091096084402,0.515262646192195,1.54584324027377,2.04728541964749,0.506328996723799,0,0.252433774244115,1.19664868234989,0,4.26011511019937,1.91428986632517,0,0,0,0,0,0,0,0,0,0,0,1.92972281457866,0,1.39310378409594,0,0,0,0.241011029883482,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.587043471179108,0.721832238805369,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.07333828582095,0.258543431515556,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0.285955987316295,0,0.823240336780769,0,0.355391948742546,0.791951872933429,0.602878754119172,0,0.799783929456456,0,0,0,0.718874566474748,0,0,1.01346914667305,1.84928690295345,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.623912584592421,0.713715955188647,0.157702415033935,0.35142424497814,0.300946099727719,4.5481500811197,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0.496215615637554,2.14846762603287,2.52594084989766,0.128139149255701,1.53512174720011,1.28683136914886,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0,0.393373244878272,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0.214840489736547,0,0,0,0.330569830721956,0,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0.632758849437452,1.5250415513906,0,0,0.318203247925937,0,0.359744915166629,0.274537029736055,0.353437207037059,0,0,0,0,0.487426979262569,0,0.136499911407986,0.565621727814851,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0.405820753925408,0,0.281695602532241,0.143411352204052,0.491245205065606,0,0,0.211107635297664,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.996239941255349,0,0,0,0.123084805461069,3.73247505194169,0,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.104602846312333,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0.147855149989634,0,0,0,0.414706207840855,0,0,0,1.14241563650639,0,0.181848659202559,0.107410557042488,0,0.398095888698616,2.00013882331577,1.03018711554838,0.336749488765919,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0.192914038270915,0,0,0,0.911579868532147,0,0,0,0,0.327609848846413,0,0,0,0,0,1.70254786070051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0.0752103283492573,0.40341013740704,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,1.20041606606193,0,0,0,0,0,0,0,0,0.431855182437243,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2679671827502,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85997509083376,0.924351257262837,1.29787968637137,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0.665320713092027,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p5@COL8A1 | |||
}} |
Revision as of 20:08, 21 January 2014
Short description: | p5@COL8A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_COL8A1_5end |
Coexpression cluster: | C1517_Fibroblast_Preadipocyte_Adipocyte_basal_bone_Osteoblast_pleomorphic |
Association with transcript: | 0bp_to_uc003dti.1_5end |
EntrezGene: | COL8A1 |
HGNC: | 2215 |
UniProt: | A1KY36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 8.35e-17 | 15 |
fibroblast | 7.71e-16 | 76 |
skin fibroblast | 3.53e-13 | 23 |
adipocyte of breast | 8.37e-12 | 2 |
adipocyte of omentum tissue | 2.49e-08 | 3 |
preadipocyte of the breast | 4.09e-08 | 3 |
fibrocyte | 9.72e-08 | 3 |
tendon cell | 9.72e-08 | 3 |
omentum preadipocyte | 1.15e-07 | 3 |
mesenchymal cell | 1.20e-07 | 354 |
connective tissue cell | 2.24e-07 | 361 |
multi fate stem cell | 3.21e-07 | 427 |
preadipocyte | 4.25e-07 | 12 |
somatic stem cell | 5.04e-07 | 433 |
perirenal adipocyte cell | 5.58e-07 | 1 |
stem cell | 9.04e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.58e-14 | 6 |
peritoneum | 2.58e-14 | 6 |
abdominal cavity | 2.58e-14 | 6 |
visceral peritoneum | 2.58e-14 | 6 |
integument | 7.13e-14 | 46 |
integumental system | 7.13e-14 | 46 |
skin of body | 3.80e-13 | 41 |
breast | 8.75e-09 | 10 |
chest | 5.45e-08 | 11 |
connective tissue | 9.07e-08 | 371 |
dense regular connective tissue | 9.72e-08 | 3 |
tendon | 9.72e-08 | 3 |
regular connective tissue | 9.72e-08 | 3 |
surface structure | 2.10e-07 | 99 |
cavity lining | 3.38e-07 | 12 |
serous membrane | 3.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 7.77e-07 | 1 |