FFCP PHASE1:Hg19::chr6:130687198..130687218,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114801 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21075 | |||
|TSSclassifier=strong | |||
|UniProt=Q86VY9 | |||
|association_with_transcript=319bp_to_ENST00000296978,uc003qca.2,uc010kfh.2_5end | |||
|coexpression_cluster_id=C714 | |||
|description=CAGE_peak_3_at_TMEM200A_5end | |||
|id=chr6:130687198..130687218,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.60e-31!180;CL:0000192!3.00e-22!42;CL:0000514!3.00e-22!42;CL:0000359!2.53e-20!32;CL:0000183!4.89e-18!59;CL:0000187!7.45e-18!54;CL:0000680!7.46e-18!57;CL:0000056!7.46e-18!57;CL:0000355!7.46e-18!57;CL:0000393!2.43e-16!60;CL:0000211!2.43e-16!60;CL:0000057!1.75e-15!75;CL:0002334!4.11e-09!12;CL:0002539!5.48e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.90e-25;32!CL:0000192;6.49e-21;43!CL:0002334;9.05e-12;12!CL:0000187;4.55e-11;55!CL:0000393;3.12e-10;61!CL:0000211;3.12e-10;61!CL:0002539;3.31e-10;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,8.38e-29,43;CL:0000514,8.38e-29,43;CL:0000359,8.45e-27,32;CL:0000187,2.23e-22,55;CL:0000680,3.54e-21,58;CL:0000056,3.54e-21,58;CL:0000355,3.54e-21,58;CL:0000393,1.98e-20,61;CL:0000211,1.98e-20,61;CL:0000057,1.09e-12,76;CL:0002334,1.03e-11,12;CL:0000048,2.26e-11,427;CL:0000723,2.40e-11,433;CL:0000034,5.95e-11,441;CL:0002539,3.34e-10,10;CL:0000222,7.68e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000514;6.49e-21;43!CL:0000355;2.98e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.48e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.48e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001134!3.84e-18!61;UBERON:0002036!3.84e-18!61;UBERON:0003082!3.84e-18!61;UBERON:0002385!4.87e-18!63;UBERON:0001015!4.87e-18!63;UBERON:0000383!4.87e-18!63;UBERON:0004290!2.22e-17!70;UBERON:0000914!2.29e-16!83;UBERON:0002329!2.29e-16!83;UBERON:0003077!2.29e-16!83;UBERON:0003059!2.29e-16!83;UBERON:0007282!2.29e-16!83;UBERON:0009618!2.29e-16!83;UBERON:0007285!2.29e-16!83;UBERON:0000486!1.99e-15!82;UBERON:0001637!2.20e-13!42;UBERON:0003509!2.20e-13!42;UBERON:0004572!2.20e-13!42;UBERON:0000475!3.80e-12!365;UBERON:0004573!7.95e-12!33;UBERON:0004571!7.95e-12!33;UBERON:0005256!1.55e-09!143;UBERON:0002049!2.18e-09!79;UBERON:0007798!2.18e-09!79;UBERON:0001981!8.66e-09!60;UBERON:0007500!8.66e-09!60;UBERON:0004537!8.66e-09!60;UBERON:0006965!8.66e-09!60;UBERON:0004872!8.73e-09!84;UBERON:0001135!3.95e-08!15;UBERON:0004237!5.48e-08!10;UBERON:0004695!5.48e-08!10;UBERON:0002111!5.48e-08!10;UBERON:0004178!5.48e-08!10;UBERON:0002100!5.94e-08!216;UBERON:0000481!2.06e-07!347;UBERON:0000055!3.11e-07!69;UBERON:0000119!4.70e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.59e-14;33!UBERON:0004571;2.59e-14;33!UBERON:0001637;1.92e-11;42!UBERON:0003509;1.92e-11;42!UBERON:0004572;1.92e-11;42!UBERON:0004237;3.31e-10;10!UBERON:0004695;3.31e-10;10!UBERON:0002111;3.31e-10;10!UBERON:0004178;3.31e-10;10!UBERON:0001135;5.74e-08;15!UBERON:0000947;1.60e-07;21!UBERON:0010191;1.60e-07;21!UBERON:0007500;2.18e-07;56!UBERON:0001981;2.18e-07;56!UBERON:0004537;2.18e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,7.11e-22,62;UBERON:0002036,7.11e-22,62;UBERON:0003082,7.11e-22,62;UBERON:0007524,1.09e-20,73;UBERON:0002329,1.13e-20,71;UBERON:0003059,1.13e-20,71;UBERON:0007282,1.13e-20,71;UBERON:0004290,1.13e-20,71;UBERON:0009618,1.13e-20,71;UBERON:0002385,1.27e-20,64;UBERON:0001015,1.27e-20,64;UBERON:0000383,1.27e-20,64;UBERON:0003077,4.04e-20,72;UBERON:0007285,4.04e-20,72;UBERON:0000486,1.66e-18,83;UBERON:0007503,1.69e-18,78;UBERON:0001637,1.66e-17,42;UBERON:0003509,1.66e-17,42;UBERON:0004572,1.66e-17,42;UBERON:0004573,3.99e-16,33;UBERON:0004571,3.99e-16,33;UBERON:0007500,5.37e-12,59;UBERON:0001981,5.37e-12,59;UBERON:0004537,5.37e-12,59;UBERON:0006965,5.37e-12,59;UBERON:0005256,3.47e-11,122;UBERON:0002049,5.87e-11,78;UBERON:0007798,5.87e-11,78;UBERON:0000055,2.17e-10,68;UBERON:0004872,3.13e-10,83;UBERON:0004237,3.34e-10,10;UBERON:0004695,3.34e-10,10;UBERON:0002111,3.34e-10,10;UBERON:0004178,3.34e-10,10;UBERON:0002100,3.87e-10,199;UBERON:0003104,1.22e-08,160;UBERON:0009142,1.22e-08,160;UBERON:0001135,5.56e-08,15;UBERON:0004535,1.24e-07,109;UBERON:0000947,1.63e-07,21;UBERON:0010191,1.63e-07,21;UBERON:0001009,4.63e-07,112;UBERON:0000490,6.63e-07,148 | |||
|phase1_expression=11.4457378940451,7.92171938396638,9.16203626623813,6.00439790118782,5.36353313312745,30.5318483435129,2.53299878168311,1.26343974685366,2.08948502559871,2.45733936501509,0,0,0,0.247532705920093,0,21.5144046864568,24.1077811209591,21.9093027116212,20.4931775492013,0.369363174230364,1.63200552995402,0.940364164434263,0,0,0.125542639594803,0.0764134057479513,0.328402357799783,0,0,0,0,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,1.44575660953827,1.50401373190767,1.88300474649071,0,0.486634870302636,0.756278537312543,0.665188192387692,0.527008714158756,2.0956652079634,1.82147644146271,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,16.8970463576408,21.1472954479848,21.8475148341811,39.8702902840851,35.1121698376373,6.72813120170769,0,0.49333509683432,3.42332138939743,0.134710672069688,0.817309515567294,0.756787138224657,0.576175924479999,0.70296429550139,0,0,3.28787097213962,1.996386476944,0.809364721840658,0.140450806702248,0.204154171254893,0.245668634623536,0.516628905878827,1.18800285728205,2.22540236350701,5.46096817162816,10.0606539854273,1.0100166837244,0.750711119231785,0,2.63386572528503,0.30648779579902,1.95309476578576,0.567160915800105,3.04962380671065,7.68806599746843,2.33125091275518,1.20036438433761,1.33968288009971,2.31876486041066,6.88632368426882,5.40084263172052,12.764247676117,0.252433774244115,1.47279837827679,4.84938170456436,2.13005755509969,0.705264687593482,0.847802961552438,1.93260853163297,1.90922284413584,0.286804595389004,0.609868530647977,0.662648841607426,1.04574548582567,1.0366105501537,0.756962552626885,1.09493207722749,0,2.57296375277154,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,2.94017422771084,0,0.982827216677626,0,0,0.614942192715568,1.20097467208968,0.98775256867763,1.1240175325762,3.21692711717219,0.185176890317059,1.3032332212413,0,0,0.463721619900307,5.75302601755526,0,0,0,0,0,0,0,0,0,0.839910640994298,0.850650583454319,0.447792613514241,0.290633938513962,1.53353071666084,0,0,0.207328115540772,0,0,0,0,0,0,0.205654985406647,0,0,1.00917975910825,4.3596006883328,1.68678057388185,42.0133076212778,0,0.845302752556,26.3278735419022,41.6029747645464,0.257207374262142,1.41849132023278,0.532844358032199,0.285955987316295,2.71310802695722,4.93944202068461,0.325736184293735,0,0.791951872933429,4.82303003295338,13.0730018790044,8.19778527692868,0,0,0,0.718874566474748,0,24.2482738569221,0.289562613335158,1.02738161275192,0.537182889719687,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,0.36807447515742,0,0.271265023699736,2.07970861530807,2.85486382075459,1.10391690523754,1.99140405487612,6.01892199455438,20.4666753650386,16.5556914068008,13.2845119707087,11.9839959552107,3.73599542212756,0.391602314925481,1.37257369524342,0,0,0,0,0,0.604780586659361,23.0740261271462,12.1234958897569,16.2782854771183,20.2459855824008,19.4448754645347,24.7715038561156,34.1361552823479,11.2573076475939,20.0644749603834,11.3335475299057,10.3850885836724,11.1561963321561,0.725156697549733,0.40101294060657,0,3.21480454860899,4.18809686415449,1.18011973463482,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.431831832204279,0,1.08378575017541,1.00337954770971,0,0,0.223874754722178,0,0,0.769350375349168,0,0,2.06082023295445,0,0,3.44559322797703,1.30012049207304,22.4957501781823,1.06337790121334,0,0,0.275673144969061,0,0.435050081742686,0.170453254832202,2.49289699810865,0,0,0,0,38.1173350423774,57.2958471231765,30.6696398870664,2.46426864140871,10.6461206063404,21.7483248018768,33.5436836578095,4.00749682877575,1.116475108079,2.84741482246853,1.90630193923825,1.02359116524534,1.28381696410176,22.9106338506674,3.13979456079692,0.899362287916574,2.74537029736055,3.18093486333353,12.7374963391189,17.4361353290309,2.52755073743389,0,23.3964950046033,25.3560352216213,16.9259890145902,5.65621727814851,47.463408980502,25.9141711466678,10.6150236038595,25.868602229972,2.89387767133344,2.62357900818653,35.5093159684732,24.1662328517805,44.7896008026264,10.6124400630998,4.42120684559045,36.7371183025688,7.80474340955315,7.38876723541824,5.26871828735843,1.89736586882858,6.29882496440969,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.957526850661834,0,0,0,0,0,0,1.86220955581764,0,0,0,0,0,0,0,0,0,0,1.08182271390393,0,0,0,2.63714722689409,0,0.445773537109913,0,0,0,0,0.994147647766298,0.422008249231538,0.779160935160341,0,0,0.996239941255349,4.14425873296722,1.76352923497993,0.818149460017238,0,2.79935628895627,0,0,0,2.07151151837561,0,0,0.969332746095218,0.0927680981618513,1.99613798001194,0,0,2.17499872630438,0,0,0,0,0,0,0,0.2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| |||
|short_description=p3@TMEM200A | |||
}} |
Revision as of 13:51, 22 January 2014
Short description: | p3@TMEM200A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TMEM200A_5end |
Coexpression cluster: | C714_Smooth_Fibroblast_Mesenchymal_mesenchymal_Myoblast_leiomyoma_Preadipocyte |
Association with transcript: | 319bp_to_ENST00000296978, uc003qca.2, uc010kfh.2_5end |
EntrezGene: | TMEM200A |
HGNC: | 21075 |
UniProt: | Q86VY9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 8.38e-29 | 43 |
smooth muscle myoblast | 8.38e-29 | 43 |
vascular associated smooth muscle cell | 8.45e-27 | 32 |
muscle cell | 2.23e-22 | 55 |
muscle precursor cell | 3.54e-21 | 58 |
myoblast | 3.54e-21 | 58 |
multi-potent skeletal muscle stem cell | 3.54e-21 | 58 |
electrically responsive cell | 1.98e-20 | 61 |
electrically active cell | 1.98e-20 | 61 |
fibroblast | 1.09e-12 | 76 |
preadipocyte | 1.03e-11 | 12 |
multi fate stem cell | 2.26e-11 | 427 |
somatic stem cell | 2.40e-11 | 433 |
stem cell | 5.95e-11 | 441 |
aortic smooth muscle cell | 3.34e-10 | 10 |
mesodermal cell | 7.68e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.48e-07 | 14 |