FFCP PHASE1:Hg19::chr7:5566911..5566936,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=60 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=132 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=386bp_to_BC009636_5end | |||
|description=CAGE_peak_9_at_ACTB_5end | |||
|id=chr7:5566911..5566936,- | |||
|ontology_enrichment_celltype=CL:0000393!1.87e-09!60;CL:0000211!1.87e-09!60;CL:0000055!2.31e-09!180;CL:0000222!3.77e-08!119;CL:0000183!3.96e-08!59;CL:0002371!1.03e-07!591;CL:0000187!2.55e-07!54;CL:0000144!4.51e-07!625;CL:0000680!5.95e-07!57;CL:0000056!5.95e-07!57;CL:0000355!5.95e-07!57;CL:0000192!7.51e-07!42;CL:0000514!7.51e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.79e-09,61;CL:0000211,4.79e-09,61;CL:0000222,3.47e-08,121;CL:0000187,5.85e-07,55;CL:0000723,6.65e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!3.29e-08!84;UBERON:0000486!3.86e-08!82;UBERON:0000055!1.24e-07!69;UBERON:0001637!1.34e-07!42;UBERON:0003509!1.34e-07!42;UBERON:0004572!1.34e-07!42;UBERON:0001981!1.51e-07!60;UBERON:0007500!1.51e-07!60;UBERON:0004537!1.51e-07!60;UBERON:0006965!1.51e-07!60;UBERON:0004535!1.54e-07!110;UBERON:0003081!2.77e-07!216;UBERON:0002049!2.84e-07!79;UBERON:0007798!2.84e-07!79;UBERON:0004290!4.17e-07!70;UBERON:0001009!5.40e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.46e-14,315;UBERON:0004120,4.46e-14,315;UBERON:0006603,4.46e-14,315;UBERON:0007503,1.26e-08,78;UBERON:0003081,3.50e-08,203;UBERON:0000486,7.74e-08,83;UBERON:0004872,8.62e-08,83;UBERON:0001637,1.30e-07,42;UBERON:0003509,1.30e-07,42;UBERON:0004572,1.30e-07,42;UBERON:0005256,2.51e-07,122;UBERON:0000055,2.99e-07,68;UBERON:0004535,3.33e-07,109;UBERON:0007524,3.75e-07,73;UBERON:0007500,3.78e-07,59;UBERON:0001981,3.78e-07,59;UBERON:0004537,3.78e-07,59;UBERON:0006965,3.78e-07,59;UBERON:0002049,6.45e-07,78;UBERON:0007798,6.45e-07,78;UBERON:0003077,7.68e-07,72;UBERON:0007285,7.68e-07,72;UBERON:0002329,8.18e-07,71;UBERON:0003059,8.18e-07,71;UBERON:0007282,8.18e-07,71;UBERON:0004290,8.18e-07,71;UBERON:0009618,8.18e-07,71 | |||
|phase1_expression=12.1724514111273,13.9165340529139,11.2763523276777,42.0307853083148,45.1430705371561,37.5105565363159,20.2639902534648,6.31719873426831,3.13422753839806,1.96587149201207,62.1043039495461,2.18441372130172,4.22027165165526,1.11389717664042,4.30816588446291,12.101852636132,9.64311244838363,12.4152715365853,12.6862527685532,5.17108443922509,13.2600449308764,4.07491137921514,5.43848375549008,3.42186062682211,3.76627918784408,7.56492716904717,7.55325422939501,6.53299484903538,0.786728553697808,0.767658796194425,2.63187409637329,5.51652734687356,6.92773613189975,4.06729411183466,1.39440961044543,0.995184627411951,0,6.64794490238253,3.81034450193269,8.24641308720237,3.80656306207871,2.59114932815184,3.09090681161024,6.10672602874172,3.02300754951048,3.39617685662943,5.81072592264212,5.34518254428373,4.64559556342655,7.76769459269806,6.40401766322752,1.41889337933151,3.44745680736619,1.29096936716765,0,6.77672422353377,3.27487380069415,3.82029923556644,11.9372718024652,0.962787081228281,5.75403413219137,6.26717470354761,3.19141852194611,2.13112375266347,7.83564944297177,6.24123747160254,3.11411124497787,6.78371396193207,4.17186334736161,1.95469960234605,3.63239701580021,1.10483290796269,3.79754864929061,2.11255286311942,4.25208599930087,1.67726916406701,2.69588714751588,2.70318407114711,1.76798145366788,2.56511469367124,4.97291692997725,2.55729815270488,0,0.546138611262131,0.889509253863555,0.853460445133014,3.2031678962881,0,0,0,2.27685187643779,2.93618594685469,1.91136614062614,0,0,1.84368859342554,0.983548850569165,2.75107533924415,2.2616164889946,3.00935691703221,1.30368906653436,0.473447805734733,5.84480185223734,2.00538822393312,1.76763544484902,1.10766947291811,1.35401931882508,10.631579537231,6.89314542067355,11.18177751305,11.0540007114339,1.73881851441031,0.889719378972363,0.535081656179426,1.04535523804977,2.83273356743915,0.766440987203842,1.37450978193052,0,2.54852331459277,1.95325036156926,0,1.50575119077773,1.53583933385302,1.24930726552346,1.18388626022008,0.821127996921047,2.21767417547206,4.81392352410313,2.75166367377318,26.8187552945358,1.34140171940727,2.68511379871414,26.0236189716888,0,8.40109809972778,0,1.94653948121054,2.17430079477356,7.76052891118974,4.91874799881506,0.851363990735132,4.37154345951051,4.82019775619758,11.6837061715686,16.1940655688319,11.5673425651413,0.715471872916026,1.14398982156026,1.11437250398869,3.57772333260069,3.4409383804245,3.81854551768354,1.69592382577203,9.22898759661793,9.35401342596229,2.92592953151535,4.39308490587859,3.91342888955381,2.00832367658802,22.9612710752214,6.0821768457481,13.1793511076012,7.35326160691737,2.43042584364528,2.67899184852239,2.46982309888787,2.0270066486998,1.53316637465883,0.949265659568129,4.03043836646896,0,0,2.18047026071267,16.4000744059455,8.23098325819768,2.25095607382472,10.3261183469573,12.0587249947441,7.8494864019923,21.349799145941,5.92002116201184,0.933633106199299,5.38842688278752,6.37501422142489,2.72443369760877,2.88087962239999,0.468642863667593,12.1742429963825,2.85235910772225,11.2086510413851,4.11020745253177,5.6655530528846,6.17983549489893,2.24569588380383,5.77321291365309,0.516628905878827,4.75201142912821,7.17074094907815,3.64064544775211,7.90479955997862,1.17835279767846,1.62654075833553,2.49357703935765,4.38977620880838,10.7270728529657,6.76071265079686,4.19699077692078,15.0687293978644,1.49490172172997,2.11931901159562,9.60291507470087,5.35873152039882,15.2007918626921,2.97786970130544,2.53164498361899,8.76933046450788,17.1654966485998,2.20919756741518,1.2931684545505,11.005297368015,6.54888638479662,4.23901480776219,5.60456474173561,4.36393792945335,7.1701148847251,4.63500083292463,1.98794652482228,3.25343040034651,3.52447587052259,4.28945446488568,4.74470566798579,4.69348596989448,28.9458422186798,1.38134921352481,6.96551892047969,7.21879481669586,4.61396520155391,2.52877035117153,2.6511213287183,5.95587452754927,4.57546832594053,4.03360052488864,4.98875840192608,4.51309369788296,3.07797725557112,11.0723318193697,21.0362660705169,2.8810180793198,7.3504355692771,1.26755034821831,0,5.90789906681404,2.6487785964879,2.45976877086227,3.77449182656756,6.03626569747441,3.37205259772859,9.65078135151656,2.87024179991442,0,5.19967392639789,7.21656710126366,0.927443239800615,0.939269553886573,2.88732895522148,5.09284063834272,5.51737041480335,5.53143078571493,3.43394464837949,9.84868024349589,7.72214074959484,8.02608276359133,0.93733833986777,1.34385702559088,1.41775097242386,2.05984602216551,1.16253575405585,3.06706143332169,0.492663237895943,3.78608266256872,2.69526550203004,3.45887888200707,2.5248486685276,1.90493682876507,2.29193055334967,1.17217447210047,15.3965201420435,4.42158218624291,3.30377363628309,3.14409075893636,2.01835951821649,4.3596006883328,1.6134422880609,1.93907573636667,3.57656445851882,9.298330278116,5.05282421511254,19.7614130131596,1.28603687131071,2.83698264046557,6.66055447540248,2.14466990487221,0.542621605391443,6.58592269424615,3.25736184293735,2.84313558994037,8.71147060226772,2.1100756394171,1.74306691720059,6.79816340037988,10.9461402577071,8.53837055434615,27.4084121327941,1.67737398844108,8.04033550838797,9.98458335285029,3.04040744001916,3.28762116080613,2.86497541183833,3.6988097517864,2.56139988262505,6.03757209606648,5.51875056002918,5.33598710867173,2.60279707715243,13.9191986299985,4.52293916402742,34.4486925892708,23.2192177423627,68.8071356169257,12.8468809165171,1.2269149171914,6.5022167737758,7.5954206635926,23.5007073529812,33.1877919162721,15.2971342582917,7.61419197452636,2.40756879782175,0,2.0694614258501,2.65690239414175,2.58116835958384,7.12445638638279,2.74121620447837,6.51972505240626,1.44737618286021,4.74571241800957,3.62873696531711,6.97193414326397,8.32177197552485,9.07170879989041,4.96215615637554,5.37116906508219,15.436305193819,5.12556597022804,6.65219423786715,17.8547852469404,19.2943486378488,6.47680713971153,11.5415121453533,2.7101961484557,9.34657972530518,20.2206058520329,4.71351853407327,19.4491276194186,12.8913384510255,4.82220682291348,8.01201139229555,8.65421138732199,2.70719767744447,1.92538342761037,3.92174884588428,1.46139224653261,1.89992932007176,12.5106722477986,13.6074964221213,4.10240240594065,9.25363516141736,4.06419656315779,13.545623894081,3.3133915495855,4.15538004464362,7.38786690583188,0.877039506583738,0.261435451024901,3.59030175162945,2.29610251989794,0.650756789328606,1.75169719801128,4.39533431128048,1.15513299888823,0.574265537996172,3.25030123018261,6.42735719376638,3.48014585851639,9.85911149533724,9.51722783302003,8.82154063900996,2.79292636657511,3.77043404176994,3.49429172406014,2.31483292681517,2.64455864577565,5.76570202095319,0.765676274967505,3.0347334256665,24.1719685634589,9.12955805808856,1.3940745403212,2.7723022215848,5.32306030317022,6.08953094452551,5.74505079222152,2.00374841438788,3.34942532423701,3.48017367190598,7.24394736910534,3.07077349573601,1.71175595213568,2.54562598340749,7.06453776179307,5.39617372749944,7.13796277313742,5.06593330086452,9.50257663394585,7.92551605865041,11.7952367746915,5.36397112998549,6.58026422004468,9.50851320810799,11.1929927354548,12.8678943077879,4.52032466480971,5.51365343546124,15.9225354057893,11.8381739018516,1.73632660280006,2.62357900818653,5.68149055495571,8.98488144489275,12.6763021139509,2.00775893085672,1.8667317792493,4.63672366925625,8.86902660176495,9.49984358839489,18.1112191127946,1.13841952129715,5.24902080367474,4.13755084719702,1.34060455107157,7.62236894029258,0.941438007767792,4.73555909938353,8.42357378338128,6.20802214951346,3.44585100310439,1.52234282769651,2.29391162142713,5.12682468456746,2.62054953003568,2.46817363851717,2.59389324477087,4.32025149790492,5.55187623405989,4.05931470284398,1.92495971052672,2.69544237579135,6.87471747965159,1.00988449083511,2.13425530045242,4.78278818186467,2.3949524571938,0.383010740264733,2.32840940996271,0.973865820823666,1.68478306868075,2.51058146936511,2.82023812391442,0,3.89371088943688,2.24823305145179,3.43059502224781,5.53600108997424,2.74804275804612,2.45792611446766,3.57881772627865,1.83534055883099,4.68931428964897,2.78406173895242,3.69262196843137,2.43410110628385,0.66614393599564,7.04935025439248,2.05854594449042,2.05111450980652,1.33496573924465,3.78907506543426,3.97790605528978,3.58116727106535,1.48482340416319,3.68592842519078,2.98244294329889,1.96937182974718,1.11308705022906,4.44970460412251,1.26675244876796,9.36465544780028,5.8019622261541,1.51159648712566,2.45444838005172,2.70786572014353,9.02014804219242,2.15684042753584,4.11748701753901,2.55786185113436,3.45251919729268,26.3431401581634,5.55684950723184,5.81599647657131,1.76259386507517,3.99227596002388,7.0315495493013,0.962059999958153,15.9499906595655,3.98277068999249,2.54253650292766,3.30942754475111,2.75794698593172,3.49925536059905,3.12524990879926,0.885741385813839,0.964771509003264,0,0.995213339381022,5.31985714116385,1.53569778007781,0.544692317594951,2.37020365273626,2.15460723810632,1.25336261431701,3.22789466143284,3.41079048757134,2.17294743844016,4.46601623624687,4.94627004370057,25.0526344728758,7.15353087370155,3.92450640987562,3.15802195610297,0.676786981851542,0.784250137270958,0.839107934879214,1.13852239634511,0.953619473882272,3.79796516150449,2.28525931422807,1.69623685720729,0,8.95735737970654,2.91909962861019,15.8867837682743,2.07564790076435,5.68394119153913,3.23708043466912,1.21322039365219,3.21031058919516,4.45102446878144,6.38591762254831,1.36965233252463,2.42780379534093,3.15667522279512,6.04953580243319,2.14250933141343,1.76922422959766,0.901940516486955,1.24425829676697,1.99396161812156,2.64793564700399,1.56966459203613,1.19472429772959,3.41531455235751,2.4961441142365,4.16543372004314,2.74378712760257,2.17648016451006,6.29016005671309,5.84752510403496,2.03188295707079,1.24251839046515,1.8065400551706,4.36450574197887,0.617792886840502,2.48578814858586,4.79646736263628,4.76915068087175,0.443175571691151,3.51992488922645,0.961905843018405,2.98834192635094,2.99714414373195,1.00863292007874,0.572682980829578,0.857974989309823,1.58460277786965,1.73953549791606,4.9495747269527,9.37739021907937,6.17156793242766,3.16194474672598,5.77901179803038,1.20084057741958,1.9166753044879,0,5.15718529703949,9.20105739977601,2.23425921017803,5.95817102430378,10.0502223440754,2.79550600698588,1.28767814440971,2.4548860318606,0.403100834920358,11.5295962733569,4.65983798109815,1.57566364614447,1.56590130924216,1.14586024552114,0.885847333632739,4.74170659568393,1.59045937961861,2.99647493445466,9.32368261097111,13.7539436597234,27.4190623099262,1.349843349309,6.1904156364636,0.364497339948148,2.34804281319486,1.33969702408637,0.367182116944987,1.26720403823288,0.896436696664224,3.07064315711112,11.4351252219739,3.31045985182716,4.068296602476,7.05899482279827,4.32110745600634,6.85833456229759,1.19730191562487,2.21649806023215,4.43008856642096,1.35974509824151,1.90517903781507,10.6005511129777,2.45637617086946,1.58679122091228,3.59282359557092,0.704815022316672,2.45611048905698,0.78602152549833,33.5533634831228,24.3121350687856,4.14984426985683,2.55764456599881,1.91502377331055,0.544017803369474,0.7520696820681,0.612691153526923,0.327872630709804,0.785270481251171,0.886068179966986,3.41673541725497,1.251909307065,2.86704597845036,2.3295100822739,0.434674820589684,0.968440444553616,1.62474530350739,2.57803499820801,7.42209867216915,2.58792401667989,4.21501415226193,3.18826262943815,7.31348534145683,5.14169281663894,2.77402930751307,3.59865710022669,4.52822223154635,1.77962244319307,4.11912123114462,7.86400803568843,6.83923682564234,4.87921994965792,4.77890301491107,0.449803112163605,8.07367375756549,5.39118070193112,4.78515086204391,5.73919567992907,10.2175174118109,4.56966254602554,4.06870733204662,11.2746168705587,6.5520439795918,3.24823631914946,6.76763010787647,6.80047199927361,8.92828833475262,7.0717392640843,5.04739592914604,5.7785949122191,3.64550705337374,1.04397716786085,4.30741258473318,7.87176412701035,5.87368090815522,4.83539870920016,1.85280868296583,4.60496504115285,2.47364804324233,4.24410884196013,2.87202149110224,2.30617366729152,3.10887307558079,4.25403938648335,0.967809053062115,6.23552988286043,4.38453973034098,3.76200406788442,8.84546591885314,7.6189601713653,1.90180911022764,17.5988908352338,1.28030075632969,4.13315951185958,6.81019144280203,2.20927140302209,2.93746966210833,1.86623178009892,0.895260599125562,0.970423302570136,0.943595651135378,0.764467467344097,2.88545300921843,2.12574920101683,6.32072397720911,1.11728983594649,12.4021696754833,1.26178792002005,0.80057074828547,10.2276023670298,14.3935374356004,0.321146125482298,2.8339315265117,2.39450788585727,5.12790910601888,4.03314713954749,0.484100767249525,4.19836678642813,2.85538840518309,0.785181748008205,0.707818340086442,2.56800037930351,1.96393632455575,4.57658514560601,3.4517996303005,1.19349733269765,1.88025820873143,6.25285712980912,2.34454203369928,8.38101422340552,4.09429793775242,1.77427303460454,0.810451015420736,4.68646859168308,1.2401207790071,0.443910671357348,5.4697480901822,1.64477330057155,6.45074531906083,2.46219742103469,3.19406069098988,0.535701835878287,0.336283722218824,0.606965604236632,0.227662191351298,0.887023701626388,2.07421177600403,6.00208033030965,0.611727596791485,0.789273282754189,2.36387681767936,3.89309906622242,2.27629969266491,2.19961825882403,6.44625975621715,7.30526976407596,0.647782773655864,0.9555033757741,0.500335809236594,1.10609528212909,2.55731135809876,2.43401581223611,7.21540228257228,2.07216164163037,2.56077715640925,3.45629830907046,0.430227358820278,2.83996801753357,0.766920642832419,6.35080575286394,1.60374807980835,0.31020638566432,0,1.56597604516909,0.687051635306701,1.95068679971631,0.647428837187895,0.615976841137482,8.11870101936739,4.37139893753226,3.74303141539369,1.98950775161368,1.18920090777569,0.22589216407792,0.659643100472575,1.35866559210006,3.47283711485751,8.52382285965433,2.35158648180761,11.0316744789257,1.17838273550813,4.12247780941385,2.67341760294377,2.9585900930838,6.11737612876141,2.81951753939561,1.48253142339228,2.39858774219829,5.8922799739867,0.705789743431384,1.44434460040503,5.11235471772562,0.917458566809082,3.44014999563483,2.52434499509095,0.815897882290976,4.79985759374415,4.2322147241232,5.95192029066802,2.77305377178851,4.75889218336168,6.05598839208379,6.77446546174912,6.08152804854898,7.64916223064863,3.20660886318673,4.41095517767256,6.51839602160175,3.48582011803901,1.60778478093707,5.80418607621146,2.27552590896169,2.55880778281177,2.14257988317366,4.45663477868442,1.55186785739645,3.02756028967656,0.891060215894309,6.66986723562124,2.61260097476354,6.16019941953506,0.471464371102113,1.72133292942423,2.99394320891412,0.732629417498771,5.22963994800806,30.8915651659104,3.68283328637006,7.03922827210363,2.93379466038879,4.47585796147312,3.32878387092756,5.03184483977566,8.65534929218729 | |||
|short_description=p9@ACTB | |||
}} |
Revision as of 15:33, 22 January 2014
Short description: | p9@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_ACTB_5end |
Coexpression cluster: | NA |
Association with transcript: | 386bp_to_BC009636_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.79e-09 | 61 |
electrically active cell | 4.79e-09 | 61 |
mesodermal cell | 3.47e-08 | 121 |
muscle cell | 5.85e-07 | 55 |
somatic stem cell | 6.65e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.46e-14 | 315 |
mesoderm-derived structure | 4.46e-14 | 315 |
presumptive mesoderm | 4.46e-14 | 315 |
epithelial vesicle | 1.26e-08 | 78 |
lateral plate mesoderm | 3.50e-08 | 203 |
multilaminar epithelium | 7.74e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 8.62e-08 | 83 |
artery | 1.30e-07 | 42 |
arterial blood vessel | 1.30e-07 | 42 |
arterial system | 1.30e-07 | 42 |
trunk mesenchyme | 2.51e-07 | 122 |
vessel | 2.99e-07 | 68 |
cardiovascular system | 3.33e-07 | 109 |
dense mesenchyme tissue | 3.75e-07 | 73 |
epithelial tube open at both ends | 3.78e-07 | 59 |
blood vessel | 3.78e-07 | 59 |
blood vasculature | 3.78e-07 | 59 |
vascular cord | 3.78e-07 | 59 |
vasculature | 6.45e-07 | 78 |
vascular system | 6.45e-07 | 78 |
paraxial mesoderm | 7.68e-07 | 72 |
presumptive paraxial mesoderm | 7.68e-07 | 72 |
somite | 8.18e-07 | 71 |
presomitic mesoderm | 8.18e-07 | 71 |
presumptive segmental plate | 8.18e-07 | 71 |
dermomyotome | 8.18e-07 | 71 |
trunk paraxial mesoderm | 8.18e-07 | 71 |