FFCP PHASE1:Hg19::chr8:49833978..49833996,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6591 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11094 | |||
|TSSclassifier=strong | |||
|UniProt=O43623 | |||
|association_with_transcript=0bp_to_ENST00000020945,uc003xqp.2_5end | |||
|coexpression_cluster_id=C4759 | |||
|description=CAGE_peak_1_at_SNAI2_5end | |||
|id=chr8:49833978..49833996,- | |||
|ontology_enrichment_celltype=CL:0000055!1.23e-30!180;CL:0000057!7.04e-16!75;CL:0000220!5.29e-13!246;CL:0002321!1.14e-12!248;CL:0000680!3.33e-09!57;CL:0000056!3.33e-09!57;CL:0000355!3.33e-09!57;CL:0000183!1.71e-08!59;CL:0000221!1.88e-08!71;CL:0000187!3.42e-08!54;CL:0002077!9.41e-08!33;CL:0000393!9.70e-07!60;CL:0000211!9.70e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.15e-08;55!CL:0000723;3.59e-08;61!CL:0000048;1.20e-07;58!CL:0002077;1.46e-07;34!CL:0000349;4.80e-07;19!CL:0002320;6.68e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.80e-16,76;CL:0002321,9.99e-12,250;CL:0000680,9.62e-10,58;CL:0000056,9.62e-10,58;CL:0000355,9.62e-10,58;CL:0000187,1.05e-08,55;CL:0000221,1.41e-08,72;CL:0002077,2.35e-08,34;CL:0000349,4.79e-07,19;CL:0000393,6.35e-07,61;CL:0000211,6.35e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.15e-17!95;UBERON:0000475!1.71e-17!365;UBERON:0000486!1.12e-15!82;UBERON:0000914!2.78e-14!83;UBERON:0002329!2.78e-14!83;UBERON:0003077!2.78e-14!83;UBERON:0003059!2.78e-14!83;UBERON:0007282!2.78e-14!83;UBERON:0009618!2.78e-14!83;UBERON:0007285!2.78e-14!83;UBERON:0000468!4.73e-12!659;UBERON:0002100!2.03e-11!216;UBERON:0002199!2.71e-11!45;UBERON:0002416!2.71e-11!45;UBERON:0000481!2.72e-11!347;UBERON:0004290!3.31e-11!70;UBERON:0005256!8.44e-11!143;UBERON:0002097!7.23e-10!40;UBERON:0003104!1.15e-09!238;UBERON:0009142!1.15e-09!238;UBERON:0001134!5.00e-09!61;UBERON:0002036!5.00e-09!61;UBERON:0003082!5.00e-09!61;UBERON:0000467!7.00e-09!625;UBERON:0002385!7.51e-09!63;UBERON:0001015!7.51e-09!63;UBERON:0000383!7.51e-09!63;UBERON:0000480!1.20e-08!626;UBERON:0004923!2.08e-08!57;UBERON:0002050!4.65e-07!605;UBERON:0005423!4.65e-07!605;UBERON:0000922!5.19e-07!612;UBERON:0004119!6.05e-07!169;UBERON:0000925!6.05e-07!169;UBERON:0006595!6.05e-07!169;UBERON:0000923!8.19e-07!604;UBERON:0005291!8.19e-07!604;UBERON:0006598!8.19e-07!604;UBERON:0002532!8.19e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.96e-08;41!UBERON:0002199;3.34e-08;46!UBERON:0002416;3.34e-08;46!UBERON:0003102;4.31e-08;50!UBERON:0002384;5.87e-07;198!UBERON:0002204;6.10e-07;70!UBERON:0004923;9.44e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.09e-19,99;UBERON:0000486,2.42e-16,83;UBERON:0007524,5.53e-12,73;UBERON:0002199,5.81e-12,46;UBERON:0002416,5.81e-12,46;UBERON:0002329,8.87e-12,71;UBERON:0003059,8.87e-12,71;UBERON:0007282,8.87e-12,71;UBERON:0004290,8.87e-12,71;UBERON:0009618,8.87e-12,71;UBERON:0003077,1.69e-11,72;UBERON:0007285,1.69e-11,72;UBERON:0007503,2.10e-11,78;UBERON:0002097,1.64e-10,41;UBERON:0004923,2.30e-10,66;UBERON:0001134,1.49e-09,62;UBERON:0002036,1.49e-09,62;UBERON:0003082,1.49e-09,62;UBERON:0002385,2.30e-09,64;UBERON:0001015,2.30e-09,64;UBERON:0000383,2.30e-09,64;UBERON:0005256,8.47e-09,122;UBERON:0003104,1.77e-08,160;UBERON:0009142,1.77e-08,160;UBERON:0002100,2.96e-08,199;UBERON:0004119,2.09e-07,160;UBERON:0000925,2.09e-07,160;UBERON:0006595,2.09e-07,160;UBERON:0000165,7.40e-07,29;UBERON:0000930,7.40e-07,29;UBERON:0000033,9.02e-07,56 | |||
|phase1_expression=163.14718458496,125.677007524007,157.727978183392,89.0652355342861,126.043028628495,71.5317589762302,83.5889597955425,75.1746649377929,117.533532689927,48.1638515542957,47.4504794221251,408.485365883422,445.766193206087,91.0920357785943,77.5469859203323,48.4074105445278,63.2829254425176,56.2338769598277,60.9915998488134,74.8576033106871,84.8642875576092,60.1833065237929,13.1668554080286,17.5199264093292,32.5155436550539,0,0,0,0,0,4.79929982279836,102.055755917161,163.55481389659,97.2453046738652,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44859552370032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,136.531845135819,109.324240131693,106.12592633013,104.817354191524,167.948200063023,92.2672325780447,130.42689531638,115.332464261725,42.1625284551743,58.980019725042,38.0324622051236,16.8963007392049,96.1739561092311,76.3815952135924,0,0,0,0,0,0,0,9.46258054616737,0.347140501607594,0,0,0.275118041940067,0.417989933073621,3.6178346283706,5.69226020298736,5.69025041699939,8.05658634218294,2.28081631715554,26.6027642727505,0,2.43042584364528,0.535798369704479,1.12264686313085,1.0135033243499,1.53316637465883,1.89853131913626,1.28241220751285,0,0,123.414616756337,137.661230619603,33.4304550794491,49.3886244433306,35.8545775936017,56.7469411517371,57.7497928146576,20.2823091886439,39.7134752951628,274.799344257994,67.8941787231228,75.3559373353045,101.258119094459,122.72547191424,79.6692868234909,100.515544739363,53.0538794036338,98.3372318030851,94.0650334136557,81.7458369059064,87.9222049956076,58.7964013214093,41.0266619821305,222.150429527896,53.4601285776924,65.0312024002605,240.282599551639,173.186972177713,45.1140785396897,70.4417266879158,102.513722729148,134.327151989536,66.8143394841863,51.2311780871495,57.8504134116107,60.4543072271465,119.378580349579,104.482427271664,63.0191301777245,92.4381187268797,47.4058593683958,88.7777404701683,84.7257187851156,123.062937518594,57.8073343019022,135.221301105538,67.7296978070822,91.2374652767699,100.953602424096,85.6280991167962,171.229115902681,254.472130511249,216.537469518698,2.80539524098069,1.32529768321485,11.9679761155604,12.9576318769213,6.30802127189071,0.72995471815166,126.724121187151,109.35095949279,98.0757941602612,160.671303099065,185.523026789084,28.038711609443,26.6363810323401,24.1011029883482,25.5882016739154,25.7097744029039,28.4724742933316,18.876383142423,16.4826030705291,13.0814033361773,26.5735963664873,129.02243189917,134.173127694036,116.136881994578,10.1404027857465,0.982827216677626,15.9513274803979,0,0.614942192715568,45.1223341085122,177.027210364113,65.1930168894193,178.941570892703,175.547692020572,39.096996637239,80.0749784665275,34.6395220860656,23.0701505900403,48.0201559424511,2.88732895522148,2.31492756288305,2.28304982681518,1.58040879591855,2.57545848628462,0,0,0,157.472841097785,196.539089992666,159.071659105958,181.893359609485,128.460200823171,130.350110916172,0,0,1.24396869324463,2.16179930125442,0.37872730027914,165.666006208269,160.817127160035,134.800064291554,94.0898453124879,111.259347104996,110.826588344406,295.830357772648,121.774357599062,63.2142099808256,102.746938435151,54.8112074812978,393.422090437071,175.822972531648,63.2932717471992,68.6449083615016,150.209106569091,82.2724965735014,144.667243205742,62.6243612222686,251.77642490163,142.420578263073,174.920330965736,61.1274151837179,44.349304884272,46.4216640671763,47.9343402230162,37.0899797285432,0,0,0,81.4724508671381,33.309961391893,372.282322156275,124.222361120783,92.8752977927733,200.727339791923,0,0,0,0,19.8193806893521,16.9181810014908,12.3726210044431,7.03568314404265,10.8449587781038,0,0,0,134.469874924177,118.040242970084,49.6414993370516,98.5781883656026,94.9242220400901,75.2240519711868,53.4164852366772,53.568405751534,54.5778009734364,128.306608402706,94.9842605905674,106.381010248563,65.8577797668068,171.326012779898,103.629313990878,0,0,0,335.259094019563,429.403433937082,533.114087140226,136.955509915965,111.720316553709,123.771101644985,125.448227121331,124.856568772276,137.208394735497,71.2406718935957,108.409414743267,115.770244904159,92.1466690474938,131.371370583456,105.751444398563,0.241718899183244,138.349464509267,57.2743751181275,34.444334449382,33.6868660812426,47.4670382153115,13.9871880001298,4.85196623757813,10.1965469992991,11.6911379722609,5.59423633132241,13.6480060885076,4.25234263191289,47.2855856263685,50.8949933877955,26.8236973168414,21.0709705019038,2.54876273045038,3.3243040357149,8.50724067944278,0.219259876645935,0,1.53870075069834,7.87235149679294,4.55529752530024,21.3294894110785,37.5434805755208,26.4030399745882,337.668136341749,217.120122176198,46.5983396548063,118.711642062726,90.7346354805255,111.750675200622,100.896371058676,189.81157268224,179.240633677986,123.578609753346,96.6887907123568,113.054882106909,294.819563338073,184.400369554674,99.033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| |||
|short_description=p1@SNAI2 | |||
}} |
Revision as of 21:58, 22 January 2014
Short description: | p1@SNAI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNAI2_5end |
Coexpression cluster: | C4759_Placental_Amniotic_Mesenchymal_bone_Myoblast_Sebocyte_glioma |
Association with transcript: | 0bp_to_ENST00000020945, uc003xqp.2_5end |
EntrezGene: | SNAI2 |
HGNC: | 11094 |
UniProt: | O43623 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.80e-16 | 76 |
embryonic cell | 9.99e-12 | 250 |
muscle precursor cell | 9.62e-10 | 58 |
myoblast | 9.62e-10 | 58 |
multi-potent skeletal muscle stem cell | 9.62e-10 | 58 |
muscle cell | 1.05e-08 | 55 |
ectodermal cell | 1.41e-08 | 72 |
ecto-epithelial cell | 2.35e-08 | 34 |
extraembryonic cell | 4.79e-07 | 19 |
electrically responsive cell | 6.35e-07 | 61 |
electrically active cell | 6.35e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.09e-19 | 99 |
multilaminar epithelium | 2.42e-16 | 83 |
dense mesenchyme tissue | 5.53e-12 | 73 |
integument | 5.81e-12 | 46 |
integumental system | 5.81e-12 | 46 |
somite | 8.87e-12 | 71 |
presomitic mesoderm | 8.87e-12 | 71 |
presumptive segmental plate | 8.87e-12 | 71 |
dermomyotome | 8.87e-12 | 71 |
trunk paraxial mesoderm | 8.87e-12 | 71 |
paraxial mesoderm | 1.69e-11 | 72 |
presumptive paraxial mesoderm | 1.69e-11 | 72 |
epithelial vesicle | 2.10e-11 | 78 |
skin of body | 1.64e-10 | 41 |
organ component layer | 2.30e-10 | 66 |
skeletal muscle tissue | 1.49e-09 | 62 |
striated muscle tissue | 1.49e-09 | 62 |
myotome | 1.49e-09 | 62 |
muscle tissue | 2.30e-09 | 64 |
musculature | 2.30e-09 | 64 |
musculature of body | 2.30e-09 | 64 |
trunk mesenchyme | 8.47e-09 | 122 |
mesenchyme | 1.77e-08 | 160 |
entire embryonic mesenchyme | 1.77e-08 | 160 |
trunk | 2.96e-08 | 199 |
endoderm-derived structure | 2.09e-07 | 160 |
endoderm | 2.09e-07 | 160 |
presumptive endoderm | 2.09e-07 | 160 |
mouth | 7.40e-07 | 29 |
stomodeum | 7.40e-07 | 29 |
head | 9.02e-07 | 56 |