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From FANTOM5_SSTAR
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<td>'''Co-expression'''</td> | <td>'''Co-expression'''</td> | ||
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<td>'''Motifs'''</td> | <td>'''Motifs'''</td> | ||
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de-novo motifs discovered in the proximal region to the CAGE peaks | known and de-novo motifs discovered in the proximal region to the CAGE peaks | ||
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<td> <ul><li>[[ | <td> <ul><li> [[Novel_motif:1]] </li> <li> [[JASPAR_motif:MA0002.2|RUNX1]] </li> </ul> </td> | ||
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[[ | <ul> | ||
<li>[[Browse_Novel_motifs|Novel motifs]]</li> | |||
<li>[[Browse_JASPAR_motifs|JASPAR motifs]]</li> | |||
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</td> | </td> | ||
</tr> | </tr> | ||
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<td>'''Transcription factors'''</td> | <td>'''Transcription factors'''</td> | ||
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Revision as of 10:24, 8 July 2014
FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project. If you have any questions or comments, please contact to fantom@gsc.riken.jp
| Search genes | |||
|---|---|---|---|
| Examples | Browse | ||
| Samples | Details of profiled samples (incl. primary cells, cell lines, and tissues) | ||
| Sample classifications |
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology (FF), consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). |
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| Co-expression |
CAGE peaks (TSS regions) are grouped based on expression, by using MCL |
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| Motifs |
known and de-novo motifs discovered in the proximal region to the CAGE peaks |
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| Transcription factors |
Transcription factors. |
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