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{{CL
{{CL
|id=CL:0000062
|alt_id=
|name=osteoblast
|namespace=cell;;efo
|def="A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
|xref=BTO:0001593;;FMA:66780
|is_a=CL:0000055;;CL:0002320
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000375
|develops_from=CL:0007010
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000062
|is_a=CL:0000055 ;;CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=osteoblast
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0001593;;FMA:66780
}}
}}

Revision as of 10:12, 12 September 2014

Name:osteoblast
Namespace:cell;;efo
Definition:"A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
Xrefs:
links:

BTO:0001593

FMA:66780


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell)
develops_from:CL:0007010(preosteoblast)



Children


derives from:FF:0000127 (human osteoblast-Sciencell sample),FF:0000128 (human osteoblast-Cell applications sample)
develops from:CL:0000137 (osteocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000062 (osteoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.65e-72FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366dp5@SP7
6.65e-72FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366dp@chr8:38470503..38470508, +
6.65e-72FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366dp@chr8:38470503..38470508, +
6.65e-72FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366dp5@SP7
2.16e-54FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392583..62392613, +
2.16e-54FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45cp@chr2:37593656..37593667, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45cp1@PANX3
2.16e-54FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733547..36733556, -
2.16e-54FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45cp@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45cp47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45cp@chr1:199050926..199050944, -
2.16e-54FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45cp4@SP7
2.16e-54FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45cp1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392630..62392651, +
2.16e-54FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45cp34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45cp47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45cp@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45cp@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45cp2@PANX3
2.16e-54FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45cp@chr1:199050926..199050944, -
2.16e-54FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45cp4@SP7
2.16e-54FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45cp34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45cp@chr9:116398779..116398800, +
2.16e-54FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45cp@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45cp@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45cp2@PANX3
2.16e-54FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45cp52@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45cp@chr11:124482705..124482719, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733583..36733590, -
2.16e-54FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45cp52@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45cp@chr11:124479851..124479862, -
2.16e-54FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45cp@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45cp@chr11:124482705..124482719, +
2.16e-54FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45cp@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45cp@chr12:91395963..91395968, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45cp@chr1:77864109..77864116, +
2.16e-54FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45cp@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45cp@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733547..36733556, -
2.16e-54FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45cp@chr9:72436290..72436302, -
2.16e-54FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45cp@chr4:88731810..88731821, +
1.03e-43FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473p3@DLX5
1.03e-43FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473p3@DLX5
4.07e-41FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8p@chr16:53707116..53707125, -
4.07e-41FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8p@chr16:53707116..53707125, -
4.07e-41FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8p16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8p16@AIG1
4.07e-41FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8p@chr6:36733594..36733607, -
4.07e-41FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8p@chr6:36733594..36733607, -
4.07e-41FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8p@chr12:53721918..53721923, -
4.07e-41FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8p@chr12:53721918..53721923, -
4.67e-41FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101p@chr17:1932231..1932269, +
5.35e-41FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16bp@chr2:53859899..53859908, -
5.35e-41FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16bp@chr2:53859899..53859908, -
6.8e-37FFCP PHASE1:Hg19::chr19:28185172..28185189,-#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28185172..28185189, -
6.8e-37FFCP PHASE2:Hg19::chr5:86679358..86679365,+#_579d13471e77cd4806a73e1c84d61bdcp@chr5:86679358..86679365, +
6.8e-37FFCP PHASE2:Hg19::chr4:16020500..16020547,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:16020500..16020547, -
6.8e-37FFCP PHASE1:Hg19::chrX:58168137..58168144,-#_579d13471e77cd4806a73e1c84d61bdcp@chrX:58168137..58168144, -
6.8e-37FFCP PHASE1:Hg19::chr17:79966486..79966493,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79966486..79966493, +
6.8e-37FFCP PHASE1:Hg19::chr8:134029937..134029944,+#_579d13471e77cd4806a73e1c84d61bdcp22@TG
6.8e-37FFCP PHASE1:Hg19::chr1:21894055..21894060,+#_579d13471e77cd4806a73e1c84d61bdcp@chr1:21894055..21894060, +
6.8e-37FFCP PHASE2:Hg19::chrX:57930371..57930380,-#_579d13471e77cd4806a73e1c84d61bdcp@chrX:57930371..57930380, -
6.8e-37FFCP PHASE2:Hg19::chr13:42264908..42264914,-#_579d13471e77cd4806a73e1c84d61bdcp@chr13:42264908..42264914, -
6.8e-37FFCP PHASE1:Hg19::chr19:28271083..28271089,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28271083..28271089, +
6.8e-37FFCP PHASE1:Hg19::chr15:30360803..30360815,-#_579d13471e77cd4806a73e1c84d61bdcp@chr15:30360803..30360815, -
6.8e-37FFCP PHASE2:Hg19::chr4:88666648..88666655,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:88666648..88666655, -
6.8e-37FFCP PHASE2:Hg19::chr17:79967254..79967267,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79967254..79967267, +
6.8e-37FFCP PHASE2:Hg19::chr8:134020899..134020917,-#_579d13471e77cd4806a73e1c84d61bdcp@chr8:134020899..134020917, -
6.8e-37FFCP PHASE2:Hg19::chr3:55016696..55016715,-#_579d13471e77cd4806a73e1c84d61bdcp@chr3:55016696..55016715, -
6.8e-37FFCP PHASE2:Hg19::chr11:126573090..126573097,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:126573090..126573097, +
6.8e-37FFCP PHASE1:Hg19::chr9:29942046..29942058,+#_579d13471e77cd4806a73e1c84d61bdcp@chr9:29942046..29942058, +
6.8e-37FFCP PHASE2:Hg19::chr19:28242224..28242230,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28242224..28242230, +
6.8e-37FFCP PHASE2:Hg19::chr20:17519297..17519304,-#_579d13471e77cd4806a73e1c84d61bdcp@chr20:17519297..17519304, -
6.8e-37FFCP PHASE1:Hg19::chr4:88666648..88666655,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:88666648..88666655, -
6.8e-37FFCP PHASE1:Hg19::chr17:79967254..79967267,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79967254..79967267, +
6.8e-37FFCP PHASE2:Hg19::chr17:79965883..79965891,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79965883..79965891, +
6.8e-37FFCP PHASE1:Hg19::chr11:30911556..30911574,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:30911556..30911574, +
6.8e-37FFCP PHASE2:Hg19::chr1:21894055..21894060,+#_579d13471e77cd4806a73e1c84d61bdcp@chr1:21894055..21894060, +
6.8e-37FFCP PHASE1:Hg19::chr1:52116793..52116805,+#_579d13471e77cd4806a73e1c84d61bdcp@chr1:52116793..52116805, +
6.8e-37FFCP PHASE2:Hg19::chr19:28185172..28185189,-#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28185172..28185189, -
6.8e-37FFCP PHASE1:Hg19::chr20:17519297..17519304,-#_579d13471e77cd4806a73e1c84d61bdcp@chr20:17519297..17519304, -
6.8e-37FFCP PHASE1:Hg19::chr17:79965883..79965891,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79965883..79965891, +
6.8e-37FFCP PHASE1:Hg19::chr8:134020899..134020917,-#_579d13471e77cd4806a73e1c84d61bdcp@chr8:134020899..134020917, -
6.8e-37FFCP PHASE2:Hg19::chrX:58168137..58168144,-#_579d13471e77cd4806a73e1c84d61bdcp@chrX:58168137..58168144, -
6.8e-37FFCP PHASE2:Hg19::chr4:88731854..88731869,+#_579d13471e77cd4806a73e1c84d61bdcp@chr4:88731854..88731869, +
6.8e-37FFCP PHASE2:Hg19::chr17:79968630..79968635,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79968630..79968635, +
6.8e-37FFCP PHASE1:Hg19::chr1:39992756..39992784,-#_579d13471e77cd4806a73e1c84d61bdcp@chr1:39992756..39992784, -
6.8e-37FFCP PHASE1:Hg19::chr12:67914694..67914707,+#_579d13471e77cd4806a73e1c84d61bdcp@chr12:67914694..67914707, +
6.8e-37FFCP PHASE2:Hg19::chr8:134104319..134104347,-#_579d13471e77cd4806a73e1c84d61bdcp@chr8:134104319..134104347, -
6.8e-37FFCP PHASE2:Hg19::chr15:30360803..30360815,-#_579d13471e77cd4806a73e1c84d61bdcp@chr15:30360803..30360815, -

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