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{{CL
{{CL
|id=CL:0000075
|alt_id=
|name=columnar/cuboidal epithelial cell
|namespace=cell
|def=
|xref=
|is_a=CL:0000066;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000075
|is_a=CL:0000066 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=columnar/cuboidal epithelial cell
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:13, 12 September 2014

Name:columnar/cuboidal epithelial cell
Namespace:cell


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)



Children


is a:CL:0000067 (ciliated epithelial cell),CL:0000239 (brush border epithelial cell),CL:0000710 (neurecto-epithelial cell),CL:0002224 (lens epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000075 (columnar/cuboidal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.52e-56FFCP PHASE1:Mm9::chr9:50547790..50547793,+#_8f8c679af7815cd04c707797ad5724c8p@chr9:50547790..50547793, +
6.52e-56FFCP PHASE2:Mm9::chr9:50547790..50547793,+#_8f8c679af7815cd04c707797ad5724c8p@chr9:50547790..50547793, +
1.01e-55FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_7a80e3c37547fcf2ba714f55009e0ff4p@chr8:122335239..122335244, +
1.01e-55FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_7a80e3c37547fcf2ba714f55009e0ff4p@chr8:122335239..122335244, +
1.21e-55FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_76cc84082184e9f474bf9096b58142c9p@chr17:46693370..46693378, +
1.21e-55FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_76cc84082184e9f474bf9096b58142c9p@chr17:46693370..46693378, +
1.12e-51FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_2d7c69f018595c78cc2cf5f760d99484p6@GPR143
1.12e-51FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_2d7c69f018595c78cc2cf5f760d99484p6@GPR143
2.72e-51FFCP PHASE2:Hg19::chr6:10412262..10412271,-#_d36936d5023eab0a1effa65b77a5059ep21@TFAP2A
2.72e-51FFCP PHASE1:Hg19::chr6:10412262..10412271,-#_d36936d5023eab0a1effa65b77a5059ep21@TFAP2A
3.82e-51FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_0c267ee6752b6f64387d0a4716d7413dp1@AK129493
3.82e-51FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_0c267ee6752b6f64387d0a4716d7413dp24@TYRP1
3.82e-51FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_0c267ee6752b6f64387d0a4716d7413dp11@IL6R
3.82e-51FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12708978..12708990, +
3.82e-51FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12709332..12709345, +
3.82e-51FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12708060..12708071, -
3.82e-51FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12702367..12702377, +
3.82e-51FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12702367..12702377, +
3.82e-51FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12709332..12709345, +
3.82e-51FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12708060..12708071, -
3.82e-51FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_0c267ee6752b6f64387d0a4716d7413dp33@TYRP1
3.82e-51FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_0c267ee6752b6f64387d0a4716d7413dp1@ENST00000380106
3.82e-51FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_0c267ee6752b6f64387d0a4716d7413dp33@TYRP1
3.82e-51FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_0c267ee6752b6f64387d0a4716d7413dp1@ENST00000380106
3.82e-51FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_0c267ee6752b6f64387d0a4716d7413dp7@MFSD12
3.82e-51FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_0c267ee6752b6f64387d0a4716d7413dp@chr16:89986251..89986268, +
3.82e-51FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_0c267ee6752b6f64387d0a4716d7413dp7@MFSD12
3.82e-51FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_0c267ee6752b6f64387d0a4716d7413dp1@AK129493
3.82e-51FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_0c267ee6752b6f64387d0a4716d7413dp24@TYRP1
3.82e-51FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_0c267ee6752b6f64387d0a4716d7413dp@chr9:12708978..12708990, +
3.82e-51FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_0c267ee6752b6f64387d0a4716d7413dp11@IL6R
3.82e-51FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_0c267ee6752b6f64387d0a4716d7413dp@chr16:89986251..89986268, +
4.24e-50FFCP PHASE2:Mm9::chr12:79850576..79850587,-#_a04b3d0d80a140eb4949da586c3f5e6bp@chr12:79850576..79850587, -
4.24e-50FFCP PHASE1:Mm9::chr12:79850576..79850587,-#_a04b3d0d80a140eb4949da586c3f5e6bp@chr12:79850576..79850587, -
4.24e-50FFCP PHASE2:Mm9::chr4:141179191..141179200,+#_a04b3d0d80a140eb4949da586c3f5e6bp@chr4:141179191..141179200, +
4.24e-50FFCP PHASE1:Mm9::chr4:141179191..141179200,+#_a04b3d0d80a140eb4949da586c3f5e6bp@chr4:141179191..141179200, +
5.28e-50FFCP PHASE2:Mm9::chr15:84503292..84503296,+#_2bdb9f5c078362eb27edb1e19663b240p@chr15:84503292..84503296, +
5.28e-50FFCP PHASE1:Mm9::chr15:84503292..84503296,+#_2bdb9f5c078362eb27edb1e19663b240p@chr15:84503292..84503296, +
5.28e-50FFCP PHASE1:Mm9::chr12:40668168..40668171,+#_2bdb9f5c078362eb27edb1e19663b240p@chr12:40668168..40668171, +
5.28e-50FFCP PHASE2:Mm9::chr12:40668168..40668171,+#_2bdb9f5c078362eb27edb1e19663b240p@chr12:40668168..40668171, +
4.72e-48FFCP PHASE1:Hg19::chr17:505227..505267,-#_d64db4b72a36cbe060d316f6148a9147p@chr17:505227..505267, -
4.72e-48FFCP PHASE2:Hg19::chr17:505227..505267,-#_d64db4b72a36cbe060d316f6148a9147p@chr17:505227..505267, -
3.84e-45FFCP PHASE1:Mm9::chr2:33323607..33323635,+#_d8c580e714cdc6d3b894b2f2808cb725p@chr2:33323607..33323635, +
3.84e-45FFCP PHASE2:Mm9::chr2:33323607..33323635,+#_d8c580e714cdc6d3b894b2f2808cb725p@chr2:33323607..33323635, +
6.09e-45FFCP PHASE2:Mm9::chr8:107365938..107365944,+#_88c27d6827dcec7ed328f1ec3d2fca79p@chr8:107365938..107365944, +
6.09e-45FFCP PHASE1:Mm9::chr8:107365938..107365944,+#_88c27d6827dcec7ed328f1ec3d2fca79p@chr8:107365938..107365944, +
7.5e-45FFCP PHASE1:Mm9::chr3:104598813..104598825,+#_501b10c405c83992261294c197a64f2bp@chr3:104598813..104598825, +
7.5e-45FFCP PHASE2:Mm9::chr3:104598813..104598825,+#_501b10c405c83992261294c197a64f2bp@chr3:104598813..104598825, +
8.95e-45FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_721f34ab6be1b86a8c97e27071bb302bp8@MFSD12
8.95e-45FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_721f34ab6be1b86a8c97e27071bb302bp2@AK129493
8.95e-45FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_721f34ab6be1b86a8c97e27071bb302bp2@AK129493
8.95e-45FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_721f34ab6be1b86a8c97e27071bb302bp8@MFSD12
9.22e-45FFCP PHASE2:Mm9::chr8:125098705..125098710,+#_37e2b36a67757434b8da3505f9396483p@chr8:125098705..125098710, +
9.22e-45FFCP PHASE1:Mm9::chr8:125098705..125098710,+#_37e2b36a67757434b8da3505f9396483p@chr8:125098705..125098710, +
9.55e-45FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_e3793db39f495f54f0e647731678590ep27@TYRP1
9.55e-45FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_e3793db39f495f54f0e647731678590ep27@TYRP1
9.55e-45FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_e3793db39f495f54f0e647731678590ep19@TYRP1
9.55e-45FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_e3793db39f495f54f0e647731678590ep19@TYRP1
9.55e-45FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_e3793db39f495f54f0e647731678590ep22@TYRP1
9.55e-45FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_e3793db39f495f54f0e647731678590ep22@TYRP1
9.55e-45FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_e3793db39f495f54f0e647731678590ep12@uc003lyl.3
9.55e-45FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_e3793db39f495f54f0e647731678590ep12@uc003lyl.3
9.55e-45FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_e3793db39f495f54f0e647731678590ep@chr9:12704349..12704362, +
9.55e-45FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_e3793db39f495f54f0e647731678590ep@chr9:12704349..12704362, +
1.02e-44FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_a92b06229cf426885a5e4d113dd78bc5p@chr9:12704539..12704547, +
1.02e-44FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_a92b06229cf426885a5e4d113dd78bc5p@chr9:12704539..12704547, +
1.02e-44FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_a92b06229cf426885a5e4d113dd78bc5p2@OCA2
1.02e-44FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_a92b06229cf426885a5e4d113dd78bc5p2@OCA2
1.09e-44FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_75eac8e08ac8cf8f93886882222fbc11p36@TYRP1
1.09e-44FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_75eac8e08ac8cf8f93886882222fbc11p36@TYRP1
1.16e-44FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_dbfb1f8ddee798d618fe652dcfeb4563p@chr12:56351078..56351092, -
1.16e-44FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_dbfb1f8ddee798d618fe652dcfeb4563p@chr12:56351078..56351092, -
1.3e-44FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_e11e6fdd81c65aceaabe0ae489acb4bap@chr5:135465906..135465912, +
1.3e-44FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_e11e6fdd81c65aceaabe0ae489acb4bap@chr5:135465906..135465912, +
3.91e-44FFCP PHASE2:Mm9::chr9:84127758..84127761,+#_7505d516810ea7a2056f920f22705f8dp@chr9:84127758..84127761, +
3.91e-44FFCP PHASE1:Mm9::chr9:84127758..84127761,+#_7505d516810ea7a2056f920f22705f8dp@chr9:84127758..84127761, +
4.38e-44FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_970822262a9e0fdb2cb7f8613093b7cep@chr9:12709200..12709209, +
4.38e-44FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_970822262a9e0fdb2cb7f8613093b7cep@chr3:69951861..69951868, +
4.38e-44FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_970822262a9e0fdb2cb7f8613093b7cep16@CAPN3
4.38e-44FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_970822262a9e0fdb2cb7f8613093b7cep@chr15:28360793..28360804, -
4.38e-44FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_970822262a9e0fdb2cb7f8613093b7cep@chr17:77925869..77925876, -
4.38e-44FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_970822262a9e0fdb2cb7f8613093b7cep@chr9:12709200..12709209, +
4.38e-44FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_970822262a9e0fdb2cb7f8613093b7cep13@SLC22A18
4.38e-44FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_970822262a9e0fdb2cb7f8613093b7cep@chr17:77925869..77925876, -
4.38e-44FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_970822262a9e0fdb2cb7f8613093b7cep@chr3:69951861..69951868, +
4.38e-44FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_970822262a9e0fdb2cb7f8613093b7cep39@LIMS2
4.38e-44FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_970822262a9e0fdb2cb7f8613093b7cep9@MFSD12
4.38e-44FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_970822262a9e0fdb2cb7f8613093b7cep2@ENST00000380106
4.38e-44FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_970822262a9e0fdb2cb7f8613093b7cep3@AK129493
4.38e-44FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_970822262a9e0fdb2cb7f8613093b7cep@chr1:212594718..212594723, +
4.38e-44FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_970822262a9e0fdb2cb7f8613093b7cep@chr9:12709019..12709029, +
4.38e-44FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_970822262a9e0fdb2cb7f8613093b7cep@chr15:28360857..28360860, -
4.38e-44FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_970822262a9e0fdb2cb7f8613093b7cep41@MED15
4.38e-44FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_970822262a9e0fdb2cb7f8613093b7cep@chr17:77923816..77923828, -
4.38e-44FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_970822262a9e0fdb2cb7f8613093b7cep39@LIMS2
4.38e-44FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_970822262a9e0fdb2cb7f8613093b7cep9@MFSD12
4.38e-44FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_970822262a9e0fdb2cb7f8613093b7cep@chr15:28360793..28360804, -
4.38e-44FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_970822262a9e0fdb2cb7f8613093b7cep2@ENST00000380106
4.38e-44FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_970822262a9e0fdb2cb7f8613093b7cep3@AK129493
4.38e-44FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_970822262a9e0fdb2cb7f8613093b7cep@chr17:77923816..77923828, -

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