Personal tools

CL:0000136: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000136
|alt_id=CL:0000450
|name=fat cell
|namespace=cell;;efo
|def="A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:A.11.329.114]
|xref=BTO:0000443;;FMA:63880
|is_a=CL:0000325;;CL:0002320
|synonym="adipocyte" EXACT [];;"adipose cell" EXACT []
|comment=
|comment=
|alt_id=CL:0000450
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:A.11.329.114]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000134
|develops_from=CL:0000134
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000136
|is_a=CL:0000325 ;;CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=fat cell
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="adipocyte" EXACT [];;"adipose cell" EXACT []
|union_of=
|xref=BTO:0000443;;FMA:63880
}}
}}

Revision as of 10:14, 12 September 2014

Name:fat cell
Namespace:cell;;efo
Definition:"A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:A.11.329.114]
Xrefs:
links:

BTO:0000443

FMA:63880
Synonyms: "adipocyte" EXACT []
"adipose cell" EXACT []
Alt_id: CL:0000450


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000325(stuff accumulating cell),CL:0002320(connective tissue cell)
develops_from:CL:0000134(mesenchymal cell)



Children


is a:CL:0002521 (subcutaneous fat cell),CL:0002615 (adipocyte of omentum tissue),CL:0002616 (perirenal adipocyte cell),CL:0002617 (adipocyte of breast)
derives from:FF:0000266 (human mature adipocyte sample),FF:0000690 (human mesenchymal stem cells adipose derived, 0 minutes after adipogenic induction sample),FF:0000691 (human mesenchymal stem cells adipose derived, 15 minutes after adipogenic induction sample),FF:0000692 (human mesenchymal stem cells adipose derived, 30 minutes after adipogenic induction sample),FF:0000693 (human mesenchymal stem cells adipose derived, 45 minutes after adipogenic induction sample),FF:0000694 (human mesenchymal stem cells adipose derived, 60 minutes after adipogenic induction sample),FF:0000695 (human mesenchymal stem cells adipose derived, 80 minutes after adipogenic induction sample),FF:0000696 (human mesenchymal stem cells adipose derived, 100 minutes after adipogenic induction sample),FF:0000697 (human mesenchymal stem cells adipose derived, 120 minutes after adipogenic induction sample),FF:0000698 (human mesenchymal stem cells adipose derived, 150 minutes after adipogenic induction sample),FF:0000699 (human mesenchymal stem cells adipose derived, 180 minutes after adipogenic induction sample),FF:0000700 (human mesenchymal stem cells adipose derived, 12 hours after adipogenic induction sample),FF:0000701 (human mesenchymal stem cells adipose derived, 24 hours after adipogenic induction sample),FF:0000702 (human mesenchymal stem cells adipose derived, 2 days after adipogenic induction sample),FF:0000703 (human mesenchymal stem cells adipose derived, 4 days after adipogenic induction sample),FF:0000704 (human mesenchymal stem cells adipose derived, 8 days after adipogenic induction sample),FF:0000705 (human mesenchymal stem cells adipose derived, 12 days after adipogenic induction sample),FF:0000706 (human mesenchymal stem cells adipose derived, 14 days after adipogenic induction sample),FF:0000707 (human mesenchymal stem cells adipose derived, untreated control sample),FF:0000731 (human adipocyte differentiation day4 sample),FF:0000732 (human adipocyte differentiation day8 sample),FF:0000733 (human adipocyte differentiation day12 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000136 (fat cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.74e-109FFCP PHASE2:Hg19::chr6:53305337..53305366,-#_eb616e72b92870193c17d0a6cb2c08bap@chr6:53305337..53305366, -
1.74e-109FFCP PHASE1:Hg19::chr6:53305337..53305366,-#_eb616e72b92870193c17d0a6cb2c08bap@chr6:53305337..53305366, -
1.05e-105FFCP PHASE2:Hg19::chr15:90207816..90207828,-#_e8a4abd4042a2d7c8c969ec09af18d13p@chr15:90207816..90207828, -
1.05e-105FFCP PHASE1:Hg19::chr15:90207816..90207828,-#_e8a4abd4042a2d7c8c969ec09af18d13p@chr15:90207816..90207828, -
2.13e-105FFCP PHASE1:Hg19::chr7:155044107..155044121,-#_b74b071a155d8ed6331815eb22cd3e80p@chr7:155044107..155044121, -
2.13e-105FFCP PHASE2:Hg19::chr7:155044107..155044121,-#_b74b071a155d8ed6331815eb22cd3e80p@chr7:155044107..155044121, -
3.16e-105FFCP PHASE2:Hg19::chr3:186575301..186575315,+#_2ef472b43a98bccf28f9f6868f382d7fp@chr3:186575301..186575315, +
3.16e-105FFCP PHASE2:Hg19::chr5:76435093..76435109,+#_2ef472b43a98bccf28f9f6868f382d7fp1@ENST00000511547, p1@ENST00000515356
3.16e-105FFCP PHASE1:Hg19::chr3:186575301..186575315,+#_2ef472b43a98bccf28f9f6868f382d7fp@chr3:186575301..186575315, +
3.16e-105FFCP PHASE1:Hg19::chr5:76435093..76435109,+#_2ef472b43a98bccf28f9f6868f382d7fp1@ENST00000511547, p1@ENST00000515356
4.49e-105FFCP PHASE1:Hg19::chr11:111888022..111888037,+#_37b40cc73b13b7acfd50b56fd0dcb6f8p17@DIXDC1
4.49e-105FFCP PHASE2:Hg19::chr11:111888022..111888037,+#_37b40cc73b13b7acfd50b56fd0dcb6f8p17@DIXDC1
1.87e-104FFCP PHASE2:Hg19::chr17:41003393..41003400,+#_ecabc7850e8180768498932f3bb614a5p2@CU690716
1.87e-104FFCP PHASE1:Hg19::chr17:41003393..41003400,+#_ecabc7850e8180768498932f3bb614a5p2@CU690716
1.18e-100FFCP PHASE1:Hg19::chr16:68325453..68325473,+#_9f288e006528f363725aa1b077b238c5p@chr16:68325453..68325473, +
1.18e-100FFCP PHASE2:Hg19::chr16:68325453..68325473,+#_9f288e006528f363725aa1b077b238c5p@chr16:68325453..68325473, +
3.26e-96FFCP PHASE1:Hg19::chr15:90224806..90224821,-#_7e0f40daa142600da47b6fac3c8d0d43p@chr15:90224806..90224821, -
3.26e-96FFCP PHASE2:Hg19::chr15:90224806..90224821,-#_7e0f40daa142600da47b6fac3c8d0d43p@chr15:90224806..90224821, -
4.53e-96FFCP PHASE2:Hg19::chr9:653255..653267,+#_20053535a6b4dd3ee0015069ea20a24ap@chr9:653255..653267, +
4.53e-96FFCP PHASE1:Hg19::chr9:653255..653267,+#_20053535a6b4dd3ee0015069ea20a24ap@chr9:653255..653267, +
4.53e-96FFCP PHASE2:Hg19::chr3:186572221..186572231,+#_20053535a6b4dd3ee0015069ea20a24ap@chr3:186572221..186572231, +
4.53e-96FFCP PHASE1:Hg19::chr3:186572221..186572231,+#_20053535a6b4dd3ee0015069ea20a24ap@chr3:186572221..186572231, +
5.65e-96FFCP PHASE1:Hg19::chr11:63273811..63273822,+#_93fc112895f2e93669e0eb81b2c59c36p6@LGALS12
5.65e-96FFCP PHASE2:Hg19::chr11:63273811..63273822,+#_93fc112895f2e93669e0eb81b2c59c36p6@LGALS12
1.15e-93FFCP PHASE2:Hg19::chr3:186570986..186570997,+#_8abdbb669aaceafeae56e3aa9a4e22c3p3@ADIPOQ
1.15e-93FFCP PHASE1:Hg19::chr3:186570986..186570997,+#_8abdbb669aaceafeae56e3aa9a4e22c3p3@ADIPOQ
2.49e-93FFCP PHASE1:Hg19::chr1:96090982..96090996,+#_38267df68066bf5033b2c10c4bd562fdp@chr1:96090982..96090996, +
2.49e-93FFCP PHASE2:Hg19::chr1:96090982..96090996,+#_38267df68066bf5033b2c10c4bd562fdp@chr1:96090982..96090996, +
6.18e-93FFCP PHASE1:Hg19::chr3:9908708..9908727,-#_e7388b4db503df75a827c6a6c657c4e5p@chr3:9908708..9908727, -
6.18e-93FFCP PHASE2:Hg19::chr3:9908708..9908727,-#_e7388b4db503df75a827c6a6c657c4e5p@chr3:9908708..9908727, -
9.32e-93FFCP PHASE2:Hg19::chrX:99848351..99848362,+#_aac86a416654ded633cfb65ad7e20ccbp4@TNMD
9.32e-93FFCP PHASE1:Hg19::chrX:99848351..99848362,+#_aac86a416654ded633cfb65ad7e20ccbp4@TNMD
1.43e-91FFCP PHASE2:Hg19::chr11:111895969..111895977,+#_e170b9268104984351f8eaa4f543a800p8@DLAT
1.43e-91FFCP PHASE1:Hg19::chr11:111895969..111895977,+#_e170b9268104984351f8eaa4f543a800p8@DLAT
6.14e-89FFCP PHASE2:Hg19::chr11:3078838..3078876,-#_3c533e36fb445ec98e9c632d5513c95cp6@CARS
6.14e-89FFCP PHASE1:Hg19::chr11:3078838..3078876,-#_3c533e36fb445ec98e9c632d5513c95cp6@CARS
2.94e-88FFCP PHASE2:Hg19::chr9:139580642..139580653,-#_548eae20fc66129d04b5ec493d39829bp@chr9:139580642..139580653, -
2.94e-88FFCP PHASE1:Hg19::chr9:139580642..139580653,-#_548eae20fc66129d04b5ec493d39829bp@chr9:139580642..139580653, -
3.98e-88FFCP PHASE1:Hg19::chr6:11532480..11532521,+#_86e9aeee1e2739f23567d2a1ab3cc55bp@chr6:11532480..11532521, +
3.98e-88FFCP PHASE2:Hg19::chr6:11532480..11532521,+#_86e9aeee1e2739f23567d2a1ab3cc55bp@chr6:11532480..11532521, +
4.4e-88FFCP PHASE2:Hg19::chr20:33596800..33596802,-#_13f73fba7c3fbec34ce71147e1712583p@chr20:33596800..33596802, -
4.4e-88FFCP PHASE1:Hg19::chr20:33596800..33596802,-#_13f73fba7c3fbec34ce71147e1712583p@chr20:33596800..33596802, -
3.88e-87FFCP PHASE2:Hg19::chr3:9911748..9911751,-#_b5dd004e2fff921a1277edf52365310dp@chr3:9911748..9911751, -
3.88e-87FFCP PHASE1:Hg19::chr3:9911748..9911751,-#_b5dd004e2fff921a1277edf52365310dp@chr3:9911748..9911751, -
8.11e-84FFCP PHASE1:Hg19::chr11:46615803..46615814,-#_43c78f53c055ef7a5d37f2177925a356p5@AMBRA1
8.11e-84FFCP PHASE2:Hg19::chr11:46615803..46615814,-#_43c78f53c055ef7a5d37f2177925a356p5@AMBRA1
8.44e-82FFCP PHASE2:Hg19::chr3:9920507..9920519,-#_93b70f7cddaeee3d404b329577f32849p4@CIDEC
8.44e-82FFCP PHASE1:Hg19::chr3:9920507..9920519,-#_93b70f7cddaeee3d404b329577f32849p4@CIDEC
9.39e-82FFCP PHASE2:Hg19::chr15:90229728..90229753,-#_9e96023783e42284569b98f660e326ddp@chr15:90229728..90229753, -
9.39e-82FFCP PHASE1:Hg19::chr15:90229728..90229753,-#_9e96023783e42284569b98f660e326ddp@chr15:90229728..90229753, -
9.95e-82FFCP PHASE1:Hg19::chr19:4503940..4503950,-#_7f9d818e7cc91f2133c352433c824108p@chr19:4503940..4503950, -
9.95e-82FFCP PHASE2:Hg19::chr19:4503940..4503950,-#_7f9d818e7cc91f2133c352433c824108p@chr19:4503940..4503950, -
1.2e-81FFCP PHASE1:Hg19::chr11:111794400..111794410,+#_b5ffac62363d77f1e9fdb844da7fa7a1p@chr11:111794400..111794410, +
1.2e-81FFCP PHASE1:Hg19::chr12:109568972..109568988,+#_b5ffac62363d77f1e9fdb844da7fa7a1p10@ACACB
1.2e-81FFCP PHASE2:Hg19::chr11:111794400..111794410,+#_b5ffac62363d77f1e9fdb844da7fa7a1p@chr11:111794400..111794410, +
1.2e-81FFCP PHASE2:Hg19::chr12:109568972..109568988,+#_b5ffac62363d77f1e9fdb844da7fa7a1p10@ACACB
1.56e-81FFCP PHASE1:Hg19::chr8:19805751..19805767,+#_596f999b36ae30666bf67fcbe31400f0p@chr8:19805751..19805767, +
1.56e-81FFCP PHASE2:Hg19::chr8:19805751..19805767,+#_596f999b36ae30666bf67fcbe31400f0p@chr8:19805751..19805767, +
2.1e-81FFCP PHASE2:Hg19::chr11:63273651..63273660,+#_f0b71cf3dfbf6e15d0abd6a0a651c88ap7@LGALS12
2.1e-81FFCP PHASE2:Hg19::chr15:90220927..90220956,-#_f0b71cf3dfbf6e15d0abd6a0a651c88ap@chr15:90220927..90220956, -
2.1e-81FFCP PHASE1:Hg19::chr11:63273651..63273660,+#_f0b71cf3dfbf6e15d0abd6a0a651c88ap7@LGALS12
2.1e-81FFCP PHASE1:Hg19::chr15:90220927..90220956,-#_f0b71cf3dfbf6e15d0abd6a0a651c88ap@chr15:90220927..90220956, -
3.11e-80FFCP PHASE1:Hg19::chr15:90208830..90208847,-#_377f29a6c57cbddd3a5f0592a8f61719p@chr15:90208830..90208847, -
3.11e-80FFCP PHASE2:Hg19::chr15:90208830..90208847,-#_377f29a6c57cbddd3a5f0592a8f61719p@chr15:90208830..90208847, -
3.94e-80FFCP PHASE2:Hg19::chr15:90208960..90208969,-#_9efcabed350ff5cadbc15f58c6268d9cp@chr15:90208960..90208969, -
3.94e-80FFCP PHASE1:Hg19::chr15:90208960..90208969,-#_9efcabed350ff5cadbc15f58c6268d9cp@chr15:90208960..90208969, -
1.03e-78FFCP PHASE2:Hg19::chr8:27023434..27023437,-#_544c520807674e76297746e3f0d37d4ep@chr8:27023434..27023437, -
1.03e-78FFCP PHASE2:Hg19::chr17:41003146..41003150,+#_544c520807674e76297746e3f0d37d4ep6@AOC3
1.03e-78FFCP PHASE1:Hg19::chr15:83330983..83330997,-#_544c520807674e76297746e3f0d37d4ep10@AP3B2
1.03e-78FFCP PHASE2:Hg19::chr5:150138790..150138796,-#_544c520807674e76297746e3f0d37d4ep18@DCTN4
1.03e-78FFCP PHASE1:Hg19::chr11:63273968..63273973,+#_544c520807674e76297746e3f0d37d4ep12@LGALS12
1.03e-78FFCP PHASE1:Hg19::chr5:150138790..150138796,-#_544c520807674e76297746e3f0d37d4ep18@DCTN4
1.03e-78FFCP PHASE2:Hg19::chr11:111896671..111896691,+#_544c520807674e76297746e3f0d37d4ep@chr11:111896671..111896691, +
1.03e-78FFCP PHASE2:Hg19::chr11:63273968..63273973,+#_544c520807674e76297746e3f0d37d4ep12@LGALS12
1.03e-78FFCP PHASE1:Hg19::chr17:41003146..41003150,+#_544c520807674e76297746e3f0d37d4ep6@AOC3
1.03e-78FFCP PHASE2:Hg19::chr15:83330983..83330997,-#_544c520807674e76297746e3f0d37d4ep10@AP3B2
1.03e-78FFCP PHASE1:Hg19::chr8:27023434..27023437,-#_544c520807674e76297746e3f0d37d4ep@chr8:27023434..27023437, -
1.03e-78FFCP PHASE1:Hg19::chr11:111896671..111896691,+#_544c520807674e76297746e3f0d37d4ep@chr11:111896671..111896691, +
2.0e-78FFCP PHASE1:Hg19::chr17:17480405..17480422,-#_321c45f0ccf36a05c88f869dabacc0bep12@PEMT
2.0e-78FFCP PHASE2:Hg19::chr17:17480405..17480422,-#_321c45f0ccf36a05c88f869dabacc0bep12@PEMT
5.3e-77FFCP PHASE2:Hg19::chr11:63256386..63256431,-#_d2489d89c0083218ed2d6a3773ef074ap@chr11:63256386..63256431, -
5.3e-77FFCP PHASE1:Hg19::chr11:63256386..63256431,-#_d2489d89c0083218ed2d6a3773ef074ap@chr11:63256386..63256431, -
8.53e-77FFCP PHASE1:Hg19::chr19:42916741..42916746,-#_a4e664a94e76c8b47293dd98fb61776fp@chr19:42916741..42916746, -
8.53e-77FFCP PHASE2:Hg19::chr19:42916741..42916746,-#_a4e664a94e76c8b47293dd98fb61776fp@chr19:42916741..42916746, -
2.74e-76FFCP PHASE2:Hg19::chr12:50503643..50503660,+#_4190a44e3ce0462e22ab7c1827acd775p@chr12:50503643..50503660, +
2.74e-76FFCP PHASE1:Hg19::chr12:50503643..50503660,+#_4190a44e3ce0462e22ab7c1827acd775p@chr12:50503643..50503660, +
3.02e-76FFCP PHASE2:Hg19::chr5:74806597..74806605,+#_a3009465edce93e5fcfffa54afc2be58p@chr5:74806597..74806605, +
3.02e-76FFCP PHASE1:Hg19::chr5:74806597..74806605,+#_a3009465edce93e5fcfffa54afc2be58p@chr5:74806597..74806605, +
4.93e-76FFCP PHASE2:Hg19::chr3:186572288..186572301,+#_2259604f03d642a68d7051c2bc175e8fp@chr3:186572288..186572301, +
4.93e-76FFCP PHASE1:Hg19::chr3:186572288..186572301,+#_2259604f03d642a68d7051c2bc175e8fp@chr3:186572288..186572301, +
6.64e-76FFCP PHASE2:Hg19::chr15:90208696..90208713,-#_74857e4b71ca019042c8d901d48414efp@chr15:90208696..90208713, -
6.64e-76FFCP PHASE1:Hg19::chr15:90208696..90208713,-#_74857e4b71ca019042c8d901d48414efp@chr15:90208696..90208713, -
8.62e-76FFCP PHASE1:Hg19::chr3:186575349..186575368,+#_01a0a130322826fc0362620db1c2874ep@chr3:186575349..186575368, +
8.62e-76FFCP PHASE2:Hg19::chr3:186575349..186575368,+#_01a0a130322826fc0362620db1c2874ep@chr3:186575349..186575368, +
9.4e-76FFCP PHASE1:Hg19::chr11:111717027..111717039,-#_505ba6ff20a8334a10d62f2510c3b619p@chr11:111717027..111717039, -
9.4e-76FFCP PHASE2:Hg19::chr11:111717027..111717039,-#_505ba6ff20a8334a10d62f2510c3b619p@chr11:111717027..111717039, -
9.77e-76FFCP PHASE2:Hg19::chr5:76435018..76435030,+#_6031fabd6e2e08c98b85c884020f5c39p2@ENST00000511547, p2@ENST00000515356
9.77e-76FFCP PHASE1:Hg19::chr5:76435018..76435030,+#_6031fabd6e2e08c98b85c884020f5c39p2@ENST00000511547, p2@ENST00000515356
1.22e-75FFCP PHASE2:Hg19::chr15:90229776..90229789,-#_30dee1bb0935d284f6dfe1fde382b895p@chr15:90229776..90229789, -
1.22e-75FFCP PHASE1:Hg19::chr15:90229776..90229789,-#_30dee1bb0935d284f6dfe1fde382b895p@chr15:90229776..90229789, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000136&oldid=3271869"