CL:0000153: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A cell that secretes glycosaminoglycans." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000153 | |||
|is_a=CL:0000327 ;;CL:0000447 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=GAG secreting cell | |||
|namespace=cell | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="hyaluronic acid secreting cell" EXACT [] | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Revision as of 10:14, 12 September 2014
| Name: | GAG secreting cell |
|---|---|
| Namespace: | cell |
| Definition: | "A cell that secretes glycosaminoglycans." [GOC:tfm] |
| Synonyms: | "hyaluronic acid secreting cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000327(extracellular matrix secreting cell),CL:0000447(carbohydrate secreting cell) |
|---|
Children
| is a: | CL:0000138 (chondrocyte),CL:0000214 (synovial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11291-117A4 (Synoviocyte, donor1)
- 11338-117F6 (Chondrocyte - de diff, donor2)
- 11339-117F7 (Chondrocyte - re diff, donor2)
... further results Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11291-117A4 (Synoviocyte, donor1)
- 11338-117F6 (Chondrocyte - de diff, donor2)
- 11339-117F7 (Chondrocyte - re diff, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000153 (GAG secreting cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.38e-98 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_7ca0a6512b2b3ff1fd17bb20015c227a | p6@ACAN |
| 2.38e-98 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_7ca0a6512b2b3ff1fd17bb20015c227a | p6@ACAN |
| 8.49e-88 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_260ae13d1df9b236690ed84a48adb8ef | p8@ACAN |
| 8.49e-88 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_260ae13d1df9b236690ed84a48adb8ef | p8@ACAN |
| 2.08e-87 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_86362eefe50320f3fddacc17fc89d199 | p@chr1:186273262..186273282, + |
| 2.08e-87 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_86362eefe50320f3fddacc17fc89d199 | p9@ERG |
| 2.08e-87 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_86362eefe50320f3fddacc17fc89d199 | p9@ERG |
| 2.08e-87 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_86362eefe50320f3fddacc17fc89d199 | p@chr1:186273262..186273282, + |
| 2.71e-77 | FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_487e254099c856438515fc4039100c21 | p@chr15:89417758..89417770, + |
| 2.71e-77 | FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_487e254099c856438515fc4039100c21 | p@chr15:89417758..89417770, + |
| 2.16e-70 | FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_8288fd0bb021934cd561964f763663df | p@chr7:150824026..150824027, - |
| 2.16e-70 | FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_8288fd0bb021934cd561964f763663df | p@chr7:150824026..150824027, - |
| 6.39e-64 | FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_be8c1d6b37ea2a64e12f48993342c1ed | p@chr15:89381951..89381962, + |
| 6.39e-64 | FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_be8c1d6b37ea2a64e12f48993342c1ed | p@chr15:89381951..89381962, + |
| 2.57e-63 | FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_37063fcf7763ea3e3056715bb325df05 | p@chr12:57629234..57629249, - |
| 2.57e-63 | FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_37063fcf7763ea3e3056715bb325df05 | p@chr12:57629234..57629249, - |
| 4.9e-63 | FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_c831c21278d2dff4cfffdba6d5b70631 | p19@CHI3L1 |
| 4.9e-63 | FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_c831c21278d2dff4cfffdba6d5b70631 | p19@CHI3L1 |
| 6.52e-61 | FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_740611a8b5065b2bf89d753f835eee24 | p@chr1:186277359..186277362, + |
| 6.52e-61 | FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_740611a8b5065b2bf89d753f835eee24 | p@chr1:186277359..186277362, + |
| 8.36e-61 | FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_2ab29671bc386ea395ec14e5a4df5aa7 | p@chr1:186276427..186276448, + |
| 8.36e-61 | FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_2ab29671bc386ea395ec14e5a4df5aa7 | p@chr1:186276427..186276448, + |
| 7.45e-59 | FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_788ef1a83eed94e821d76092f0ddff98 | p@chr1:186277186..186277192, + |
| 7.45e-59 | FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_788ef1a83eed94e821d76092f0ddff98 | p@chr1:186277186..186277192, + |
| 7.54e-59 | FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_5dabcaada171f76b09f5af9d32e77085 | p20@CHI3L1 |
| 7.54e-59 | FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_5dabcaada171f76b09f5af9d32e77085 | p20@CHI3L1 |
| 8.64e-57 | FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_10e043a2e690db8121500adbf5171e69 | p@chr12:57629315..57629334, - |
| 8.64e-57 | FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_10e043a2e690db8121500adbf5171e69 | p@chr12:57629315..57629334, - |
| 8.77e-57 | FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_00c20a43853205e6a2dc02be6654946e | p14@CHI3L1 |
| 8.77e-57 | FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_00c20a43853205e6a2dc02be6654946e | p14@CHI3L1 |
| 1.58e-53 | FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_fe119b635f3cb4180c83c41801d231fa | p@chr1:203152908..203152924, - |
| 1.58e-53 | FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_fe119b635f3cb4180c83c41801d231fa | p@chr1:203152908..203152924, - |
| 7.64e-51 | FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_c238626f5c00ca908124d34e26450398 | p16@CHI3L1 |
| 7.64e-51 | FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_c238626f5c00ca908124d34e26450398 | p16@CHI3L1 |
| 1.02e-50 | FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_cafae3fbc5cad5875d2bbb0057edd73f | p10@ACAN |
| 1.02e-50 | FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_cafae3fbc5cad5875d2bbb0057edd73f | p10@ACAN |
| 1.49e-50 | FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_8bca39339c0ff323b9c79bd6f69a1d17 | p@chr7:45956964..45956971, + |
| 1.49e-50 | FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_8bca39339c0ff323b9c79bd6f69a1d17 | p@chr7:45956964..45956971, + |
| 2.49e-50 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_1ffef7a885e4810d8d664ccae9e868d4 | p@chr8:57359975..57359992, - |
| 2.49e-50 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_1ffef7a885e4810d8d664ccae9e868d4 | p@chr8:57359975..57359992, - |
| 2.77e-50 | FFCP PHASE1:Hg19::chr1:186276386..186276397,+#_6f914066321aee59a0d4d4379e6e2b1f | p@chr1:186276386..186276397, + |
| 2.77e-50 | FFCP PHASE2:Hg19::chr1:186276386..186276397,+#_6f914066321aee59a0d4d4379e6e2b1f | p@chr1:186276386..186276397, + |
| 2.83e-50 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_b1ef49a90701b1c3456efcab285c31eb | p@chr8:57353982..57353991, - |
| 2.83e-50 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_b1ef49a90701b1c3456efcab285c31eb | p@chr8:57353982..57353991, - |
| 6.62e-50 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_55992d421fbb766d9a9378efefdc9efc | p@chr18:22150956..22150983, + |
| 6.62e-50 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_55992d421fbb766d9a9378efefdc9efc | p@chr18:22150956..22150983, + |
| 7.82e-50 | FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_1888c5a9d60652ba11abd91bb7deabce | p@chr16:66906996..66906997, - |
| 7.82e-50 | FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_1888c5a9d60652ba11abd91bb7deabce | p@chr16:66906996..66906997, - |
| 9.25e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_73b8d94161e8f2d71bf62077f1dea6e3 | p@chr8:57354278..57354286, + |
| 9.25e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_73b8d94161e8f2d71bf62077f1dea6e3 | p@chr8:57354278..57354286, + |
| 1.07e-49 | FFCP PHASE2:Hg19::chr7:45954480..45954494,+#_0f675f6f315bbc0b9ba96e0478cf72b2 | p@chr7:45954480..45954494, + |
| 1.07e-49 | FFCP PHASE1:Hg19::chr7:45954480..45954494,+#_0f675f6f315bbc0b9ba96e0478cf72b2 | p@chr7:45954480..45954494, + |
| 4.1e-49 | FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_5b531df3df55b4bf2e0a9886403e8f35 | p13@CHI3L1 |
| 4.1e-49 | FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_5b531df3df55b4bf2e0a9886403e8f35 | p13@CHI3L1 |
| 5.08e-49 | FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_d876f8d86b9ce4b0ed11c2e8524711c2 | p6@ERG |
| 5.08e-49 | FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_d876f8d86b9ce4b0ed11c2e8524711c2 | p6@ERG |
| 6.99e-47 | FFCP PHASE2:Hg19::chr1:203150369..203150408,-#_75029031a34b81934d9f61126b781960 | p@chr1:203150369..203150408, - |
| 6.99e-47 | FFCP PHASE1:Hg19::chr1:203150369..203150408,-#_75029031a34b81934d9f61126b781960 | p@chr1:203150369..203150408, - |
| 8.02e-47 | FFCP PHASE1:Hg19::chr1:186276857..186276868,+#_f34d066305dd068e03fdbdaeef151fb9 | p@chr1:186276857..186276868, + |
| 8.02e-47 | FFCP PHASE2:Hg19::chr1:186276857..186276868,+#_f34d066305dd068e03fdbdaeef151fb9 | p@chr1:186276857..186276868, + |
| 8.58e-47 | FFCP PHASE1:Hg19::chr1:203148428..203148437,-#_8ffcc352d6658f2df3639f232a4d1edd | p11@CHI3L1 |
| 8.58e-47 | FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_8ffcc352d6658f2df3639f232a4d1edd | p7@CHI3L1 |
| 8.58e-47 | FFCP PHASE2:Hg19::chr1:203148428..203148437,-#_8ffcc352d6658f2df3639f232a4d1edd | p11@CHI3L1 |
| 8.58e-47 | FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_8ffcc352d6658f2df3639f232a4d1edd | p7@CHI3L1 |
| 1.39e-46 | FFCP PHASE1:Hg19::chr7:45952836..45952875,+#_d7f4fb2dd81db2376dadf596cca901f0 | p@chr7:45952836..45952875, + |
| 1.39e-46 | FFCP PHASE2:Hg19::chr7:45952836..45952875,+#_d7f4fb2dd81db2376dadf596cca901f0 | p@chr7:45952836..45952875, + |
| 1.9e-46 | FFCP PHASE1:Hg19::chr1:203148907..203148922,+#_cd4c80b0182b06a807791224f5145826 | p@chr1:203148907..203148922, + |
| 1.9e-46 | FFCP PHASE2:Hg19::chr1:203148907..203148922,+#_cd4c80b0182b06a807791224f5145826 | p@chr1:203148907..203148922, + |
| 2.06e-46 | FFCP PHASE1:Hg19::chr1:203148057..203148072,+#_2d8165b40c8b64610d5ab5b5a939eacf | p@chr1:203148057..203148072, + |
| 2.06e-46 | FFCP PHASE2:Hg19::chr1:203148057..203148072,+#_2d8165b40c8b64610d5ab5b5a939eacf | p@chr1:203148057..203148072, + |
| 2.24e-45 | FFCP PHASE2:Hg19::chr1:203154342..203154363,-#_bce12a11399a6679d15fc0a2c6c8d527 | p9@CHI3L1 |
| 2.24e-45 | FFCP PHASE1:Hg19::chr1:203154342..203154363,-#_bce12a11399a6679d15fc0a2c6c8d527 | p9@CHI3L1 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_2b6a3dba30858fa535d33a3570f2b2cc | p@chr1:172145683..172145699, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_2b6a3dba30858fa535d33a3570f2b2cc | p@chr8:37535618..37535621, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr21:40033882..40033887,-#_2b6a3dba30858fa535d33a3570f2b2cc | p21@ERG |
| 9.75e-45 | FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_2b6a3dba30858fa535d33a3570f2b2cc | p@chr12:57628728..57628739, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_2b6a3dba30858fa535d33a3570f2b2cc | p@chr12:57628728..57628739, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_2b6a3dba30858fa535d33a3570f2b2cc | p@chr1:172145683..172145699, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_2b6a3dba30858fa535d33a3570f2b2cc | p@chr8:37535618..37535621, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr21:40033882..40033887,-#_2b6a3dba30858fa535d33a3570f2b2cc | p21@ERG |
| 1.31e-44 | FFCP PHASE1:Hg19::chr1:203148612..203148623,-#_e8e0bfec24b3187c79bb9cc0733d21ec | p12@CHI3L1 |
| 1.31e-44 | FFCP PHASE2:Hg19::chr1:203148612..203148623,-#_e8e0bfec24b3187c79bb9cc0733d21ec | p12@CHI3L1 |
| 1.82e-44 | FFCP PHASE1:Hg19::chr1:186276499..186276506,+#_2207cd7cd56a96361ac67209549f894a | p@chr1:186276499..186276506, + |
| 1.82e-44 | FFCP PHASE2:Hg19::chr1:186276499..186276506,+#_2207cd7cd56a96361ac67209549f894a | p@chr1:186276499..186276506, + |
| 1.27e-42 | FFCP PHASE1:Hg19::chr1:186275953..186275985,-#_82d233d475e8bffa7f8dd65f032cda20 | p@chr1:186275953..186275985, - |
| 1.27e-42 | FFCP PHASE2:Hg19::chr1:186275953..186275985,-#_82d233d475e8bffa7f8dd65f032cda20 | p@chr1:186275953..186275985, - |
| 1.65e-42 | FFCP PHASE2:Hg19::chr2:38466712..38466722,-#_c6e037adfc8d9b632ceea15dc0270bcd | p4@ENST00000450854 |
| 1.65e-42 | FFCP PHASE1:Hg19::chr2:38466712..38466722,-#_c6e037adfc8d9b632ceea15dc0270bcd | p4@ENST00000450854 |
| 3.11e-42 | FFCP PHASE1:Hg19::chr1:186277391..186277396,+#_8c1794d59e970a4c1d0a51f52588e75c | p@chr1:186277391..186277396, + |
| 3.11e-42 | FFCP PHASE2:Hg19::chr1:186277391..186277396,+#_8c1794d59e970a4c1d0a51f52588e75c | p@chr1:186277391..186277396, + |
| 3.67e-42 | FFCP PHASE2:Hg19::chr21:40032558..40032578,-#_2d847efd6ad0b5094ff79f65e34abbeb | p5@ERG |
| 3.67e-42 | FFCP PHASE1:Hg19::chr21:40032558..40032578,-#_2d847efd6ad0b5094ff79f65e34abbeb | p5@ERG |
| 5.01e-42 | FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_265552aa83199f02501ce26b9cce578b | p21@CHI3L1 |
| 5.01e-42 | FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_265552aa83199f02501ce26b9cce578b | p21@CHI3L1 |
| 5.48e-42 | FFCP PHASE1:Hg19::chr1:186275628..186275643,+#_b8d5839f69b45634edc929a4e3afd923 | p@chr1:186275628..186275643, + |
| 5.48e-42 | FFCP PHASE2:Hg19::chr1:186275628..186275643,+#_b8d5839f69b45634edc929a4e3afd923 | p@chr1:186275628..186275643, + |
| 1.31e-41 | FFCP PHASE1:Hg19::chr11:73003801..73003812,+#_5f0f31b1eaff5e1d2935421da9c427ca | p5@P2RY6 |
| 1.31e-41 | FFCP PHASE2:Hg19::chr11:73003801..73003812,+#_5f0f31b1eaff5e1d2935421da9c427ca | p5@P2RY6 |
| 1.47e-41 | FFCP PHASE2:Hg19::chr1:203151897..203151908,-#_b57df046f6d1f7dd0bdc55c97e0fc50b | p15@CHI3L1 |
| 1.47e-41 | FFCP PHASE1:Hg19::chr1:203151897..203151908,-#_b57df046f6d1f7dd0bdc55c97e0fc50b | p15@CHI3L1 |
