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CL:0002625: Difference between revisions

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{{CL
{{CL
|id=CL:0002625
|alt_id=
|name=seminiferous tubule epithelial cell
|namespace=cell
|def="A cell of the seminiferous tubule epithelium." [GOC:tfm]
|xref=
|is_a=CL:0000077
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-15T11:59:23Z
|def="A cell of the seminiferous tubule epithelium." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002625
|is_a=CL:0000068 ;;CL:0000077
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0004813
|name=seminiferous tubule epithelial cell
|namespace=cell
|obo_creation_date=2011-03-15T11:59:23Z
|part_of=UBERON:0001343;;UBERON:0004813
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:30, 12 September 2014

Name:seminiferous tubule epithelial cell
Namespace:cell
Definition:"A cell of the seminiferous tubule epithelium." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-15T11:59:23Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000068(duct epithelial cell),CL:0000077(mesothelial cell)
part_of:UBERON:0001343(seminiferous tubule of testis),UBERON:0004813(seminiferous tubule epithelium)



Children


is a:CL:0000216 (Sertoli cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002625 (seminiferous tubule epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data