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DOID:3095: Difference between revisions

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{{DOID
{{DOID
|id=DOID:3095
|alt_id=
|name=germ cell and embryonal cancer
|namespace=disease_ontology
|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
|xref=MSH:D009373;;UMLS_CUI:C0027658
|is_a=DOID:2994
|synonym="germ cell and embryonal neoplasm" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3095
|is_a=DOID:2994
|is_obsolete=
|located_in=
|located_in=
|name=germ cell and embryonal cancer
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="germ cell and embryonal neoplasm" RELATED []
|union_of=
|xref=MSH:D009373;;UMLS_CUI:C0027658
}}
}}

Revision as of 10:34, 12 September 2014

Name:germ cell and embryonal cancer
Namespace:disease_ontology
Definition:"A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
Xrefs:
links:

MSH:D009373

UMLS_CUI:C0027658
Synonyms: "germ cell and embryonal neoplasm" RELATED []

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:2994(germ cell cancer)



Children


is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II),DOID:171 (neuroectodermal tumor),DOID:3307 (teratoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3095 (germ cell and embryonal cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data