UBERON:0000058: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways | |comment=TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways | ||
|created_by= | |created_by= | ||
| | |def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000058 | |||
|is_a=UBERON:0000025 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=duct | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=vertebrate_core | ||
| | |synonym="anatomical duct" EXACT [];;"exocrine duct" RELATED [];;"exocrine gland duct" RELATED [] | ||
|union_of= | |||
|xref=AAO:0011123;;FMA:30320;;galen:Duct;;ncithesaurus:Duct;;TAO:0005171;;XAO:0004000;;ZFA:0005171 | |||
}} | }} |
Revision as of 10:50, 12 September 2014
Name: | duct | |
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Definition: | "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] | |
Xrefs: |
| |
Synonyms: |
"anatomical duct" EXACT [] "exocrine duct" RELATED [] "exocrine gland duct" RELATED [] | |
Comments: | TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways | |
Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000025(tube) |
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Children
is a: | UBERON:0002173 (alveolar duct),UBERON:0003928 (digestive system duct),UBERON:0005904 (duct of male reproductive system),UBERON:0006553 (renal duct),UBERON:0014716 (interlobular duct),FF:10489-107B3 (),FF:10515-107E2 () |
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part of: | CL:0000068 (duct epithelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10489-107B3
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10515-107E2
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
... further results Mouse (Mus musculus)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10489-107B3
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10515-107E2
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000058 (duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data