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{{UBERON
{{UBERON
|id=UBERON:0000161
|alt_id=
|name=orifice
|namespace=
|def="Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
|xref=FMA:3724;;SCTID:91837002
|is_a=UBERON:0004111
|synonym="anatomical orifice" EXACT [FMA:3724];;"anatomical ostium" EXACT [FMA:3724];;"hilum" NARROW []
|comment=in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
|comment=in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
|subset=upper_ontology_conflict
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000161
|is_a=UBERON:0004111
|is_obsolete=
|located_in=
|located_in=
|name=orifice
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=upper_ontology_conflict
|preceded_by=
|synonym="anatomical orifice" EXACT [FMA:3724];;"anatomical ostium" EXACT [FMA:3724];;"hilum" NARROW []
|union_of=
|xref=FMA:3724;;SCTID:91837002
}}
}}

Revision as of 10:52, 12 September 2014

Name:orifice
Definition:"Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
Xrefs:
links:

FMA:3724

SCTID:91837002
Synonyms: "anatomical orifice" EXACT [FMA:3724]
"anatomical ostium" EXACT [FMA:3724]
"hilum" NARROW []
Comments:in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
Subset: upper_ontology_conflict

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004111(anatomical conduit)



Children

is a:UBERON:0000166 (oral opening)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000161 (orifice), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data