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{{UBERON
{{UBERON
|id=UBERON:0002259
|alt_id=UBERON:FMA_77488-MA_0002567
|name=corpora quadrigemina
|namespace=
|def="In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi遯ｶ譚ｯwo inferior, two superior遯ｶ鄂ｵocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina]
|xref=BTO:0001710;;EV:0100244;;FMA:242157;;GAID:574;;http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png;;MA:0002567;;MESH:A.08.186.211.132.659.237;;ncithesaurus:Corpora_Quadrigemina;;SCTID:361579006
|is_a=UBERON:0000064;;UBERON:0004121
|synonym="colliculi" EXACT [MP:0000899];;"corpora quadrigemina" EXACT []
|comment=editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates
|comment=editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates
|alt_id=UBERON:FMA_77488-MA_0002567
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi遯ｶ譚ｯwo inferior, two superior遯ｶ鄂ｵocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=UBERON:0006777
|develops_from=UBERON:0006777
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002259
|is_a=UBERON:0000064 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=corpora quadrigemina
|namespace=
|obo_creation_date=
|part_of=UBERON:0002314
|part_of=UBERON:0002314
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="colliculi" EXACT [MP:0000899];;"corpora quadrigemina" EXACT []
|union_of=
|xref=BTO:0001710;;EV:0100244;;FMA:242157;;GAID:574;;http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png;;MA:0002567;;MESH:A.08.186.211.132.659.237;;ncithesaurus:Corpora_Quadrigemina;;SCTID:361579006
}}
}}

Revision as of 11:13, 12 September 2014

Name:corpora quadrigemina
Definition:"In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi遯ｶ譚ｯwo inferior, two superior遯ｶ鄂ｵocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina]
Xrefs:
links:

BTO:0001710
EV:0100244
FMA:242157
GAID:574
[ Gray709.png Gray709.png]
[ 200px-Gray709.png 200px-Gray709.png]
MA:0002567
MESH:A.08.186.211.132.659.237
ncithesaurus:Corpora_Quadrigemina

SCTID:361579006
Synonyms: "colliculi" EXACT [MP:0000899]
"corpora quadrigemina" EXACT []
Comments:editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates
Alt_id: UBERON:FMA_77488-MA_0002567
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0006777(tectal plate)
part_of:UBERON:0002314(midbrain tectum)



Children

derives from:FF:0011283 (mouse corpora quadrigemina- adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 16-22A4 (corpora quadrigemina, adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002259 (corpora quadrigemina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_4f66a25ab4b9c8a3e56a63115f532e2fp@chr1:158200818..158200829, -
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_4f66a25ab4b9c8a3e56a63115f532e2fp@chr1:158200818..158200829, -
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_fc13cfd0051d495b3cb9f69c4e59f637p19@Rgs8
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_fc13cfd0051d495b3cb9f69c4e59f637p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_fc13cfd0051d495b3cb9f69c4e59f637p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_fc13cfd0051d495b3cb9f69c4e59f637p@chr15:22719411..22719436, +
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_af33490429517d2a4ede973b0f1ca86cp@chr2:127098489..127098493, -
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_af33490429517d2a4ede973b0f1ca86cp@chr2:127098489..127098493, -
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_2e541c074f8fba0f0af0533bee292901p@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_2e541c074f8fba0f0af0533bee292901p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_2e541c074f8fba0f0af0533bee292901p@chr16:96721083..96721092, +
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_2e541c074f8fba0f0af0533bee292901p@chr2:158208771..158208772, +
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_f098ad130b3483122c233223a214d4bdp1@ENSMUST00000157206
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_f098ad130b3483122c233223a214d4bdp1@ENSMUST00000157206
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_2c98164c39da37ae96a9b8bea7e059c5p7@Adipor2
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_2c98164c39da37ae96a9b8bea7e059c5p7@Adipor2
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_2e5ab203f70ee1712266788efb974373p@chr14:52528327..52528336, -
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_2e5ab203f70ee1712266788efb974373p@chr14:52528327..52528336, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_d4a9e01159b3cafef70795c9fe04325ep@chr19:32177340..32177351, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_d4a9e01159b3cafef70795c9fe04325ep@chr19:32177340..32177351, -
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_664f3af9816e3a6b439650491f34a9f9p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_664f3af9816e3a6b439650491f34a9f9p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_664f3af9816e3a6b439650491f34a9f9p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_664f3af9816e3a6b439650491f34a9f9p@chr4:98216369..98216408, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_c338b11d42c19a5e5e529d53316e4b1bp@chr8:123151369..123151375, +
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_c338b11d42c19a5e5e529d53316e4b1bp@chr8:123151369..123151375, +
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_4f2a6fa49044ae5a10f55ad9e0055251p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_4f2a6fa49044ae5a10f55ad9e0055251p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_4f2a6fa49044ae5a10f55ad9e0055251p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_4f2a6fa49044ae5a10f55ad9e0055251p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_4f2a6fa49044ae5a10f55ad9e0055251p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_4f2a6fa49044ae5a10f55ad9e0055251p3@Prmt7
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_7521b287103091f4cd832ba073febc85p@chr1:101686777..101686780, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_7521b287103091f4cd832ba073febc85p@chr1:101686777..101686780, +
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_45d32020d6107ddcec31c83eec391469p6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_45d32020d6107ddcec31c83eec391469p6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_45d32020d6107ddcec31c83eec391469p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_45d32020d6107ddcec31c83eec391469p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_45d32020d6107ddcec31c83eec391469p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_45d32020d6107ddcec31c83eec391469p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_45d32020d6107ddcec31c83eec391469p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_45d32020d6107ddcec31c83eec391469p@chr17:69476739..69476749, +
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_c1fcb807b7a1de6c9461cc1bcc378dfdp19@Gas7
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_c1fcb807b7a1de6c9461cc1bcc378dfdp19@Gas7
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_493404f34d9c69cc4085466598a9ebbbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_493404f34d9c69cc4085466598a9ebbbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_493404f34d9c69cc4085466598a9ebbbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_493404f34d9c69cc4085466598a9ebbbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_493404f34d9c69cc4085466598a9ebbbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_493404f34d9c69cc4085466598a9ebbbp15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_493404f34d9c69cc4085466598a9ebbbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_493404f34d9c69cc4085466598a9ebbbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_493404f34d9c69cc4085466598a9ebbbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_493404f34d9c69cc4085466598a9ebbbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_493404f34d9c69cc4085466598a9ebbbp1@uc007ovb.1
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_493404f34d9c69cc4085466598a9ebbbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_493404f34d9c69cc4085466598a9ebbbp1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_493404f34d9c69cc4085466598a9ebbbp15@Ccdc92
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_0753ade2f30e33e439272a95736a8973p63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_0753ade2f30e33e439272a95736a8973p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_0753ade2f30e33e439272a95736a8973p63@Tcf7l2
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_0753ade2f30e33e439272a95736a8973p@chr16:96720848..96720858, +
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_8d2797e372e519cd9c1ed398d298b4bfp@chr14:93478934..93478944, -
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_8d2797e372e519cd9c1ed398d298b4bfp@chr14:93478934..93478944, -
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_b6dcf5f4e82f6daad8472558a5698e9ap2@Ghrh
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_b6dcf5f4e82f6daad8472558a5698e9ap2@Ghrh
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_03f0b79e705db5e1ff1a5dfdf14efa41p8@St18
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_03f0b79e705db5e1ff1a5dfdf14efa41p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_03f0b79e705db5e1ff1a5dfdf14efa41p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_03f0b79e705db5e1ff1a5dfdf14efa41p8@St18
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_03f0b79e705db5e1ff1a5dfdf14efa41p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_03f0b79e705db5e1ff1a5dfdf14efa41p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_03f0b79e705db5e1ff1a5dfdf14efa41p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_03f0b79e705db5e1ff1a5dfdf14efa41p7@Fam169a
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_e5e8f8d110fca60b8ae2425c4ff16115p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_e5e8f8d110fca60b8ae2425c4ff16115p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_e5e8f8d110fca60b8ae2425c4ff16115p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_e5e8f8d110fca60b8ae2425c4ff16115p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_e5e8f8d110fca60b8ae2425c4ff16115p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_e5e8f8d110fca60b8ae2425c4ff16115p@chr9:103085667..103085678, +
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_0ef77c9299f5eeef5ffdc2442d5d8c31p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_0ef77c9299f5eeef5ffdc2442d5d8c31p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_0ef77c9299f5eeef5ffdc2442d5d8c31p6@Skp1a
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_0ef77c9299f5eeef5ffdc2442d5d8c31p6@Skp1a
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_8b347e86ebf85fe30ae7a96d4e8967d2p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_8b347e86ebf85fe30ae7a96d4e8967d2p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_8b347e86ebf85fe30ae7a96d4e8967d2p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_8b347e86ebf85fe30ae7a96d4e8967d2p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_8b347e86ebf85fe30ae7a96d4e8967d2p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_8b347e86ebf85fe30ae7a96d4e8967d2p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_8b347e86ebf85fe30ae7a96d4e8967d2p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_8b347e86ebf85fe30ae7a96d4e8967d2p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_8b347e86ebf85fe30ae7a96d4e8967d2p6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_8b347e86ebf85fe30ae7a96d4e8967d2p@chr4:43519210..43519232, +
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_e92abbc64fe459ecf92248a7adfa8a81p3@Rgs17
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_e92abbc64fe459ecf92248a7adfa8a81p3@Rgs17
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_555e96262d4116037facc076f02ec3dcp14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_555e96262d4116037facc076f02ec3dcp14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_555e96262d4116037facc076f02ec3dcp1@ENSMUST00000124586
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_555e96262d4116037facc076f02ec3dcp1@ENSMUST00000124586

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