UBERON:0006562: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises | |comment=Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises | ||
|created_by= | |created_by= | ||
| | |def="The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006562 | |||
|is_a=UBERON:0004921 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=pharynx | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string | ||
| | |subset=grouping_class;;uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=AAO:0000967;;FBbt:00005380;;MAT:0000049;;MIAA:0000049;;SCTID:181211006;;WBbt:0003681 | |||
}} | }} |
Revision as of 11:40, 12 September 2014
Name: | pharynx | |
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Definition: | "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465] | |
Xrefs: |
| |
Comments: | Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises | |
Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract) |
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Children
is a: | UBERON:0001042 (chordate pharynx) |
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derives from: | FF:0100819 (pharyngeal cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10723-110A3 (pharyngeal carcinoma cell line:Detroit 562)
- 10724-110A4
- 10733-110B4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006562 (pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.