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UBERON:0006562: Difference between revisions

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{{UBERON
{{UBERON
|id=UBERON:0006562
|alt_id=
|name=pharynx
|namespace=
|def="The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
|xref=AAO:0000967;;FBbt:00005380;;MAT:0000049;;MIAA:0000049;;SCTID:181211006;;WBbt:0003681
|is_a=UBERON:0004921
|synonym=
|comment=Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
|comment=Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
|subset=grouping_class;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006562
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=pharynx
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string
|is_obsolete=
|subset=grouping_class;;uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0000967;;FBbt:00005380;;MAT:0000049;;MIAA:0000049;;SCTID:181211006;;WBbt:0003681
}}
}}

Revision as of 11:40, 12 September 2014

Name:pharynx
Definition:"The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
Xrefs:
links:

AAO:0000967
FBbt:00005380
MAT:0000049
MIAA:0000049
SCTID:181211006

WBbt:0003681
Comments:Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
Subset: grouping_class
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)



Children

is a:UBERON:0001042 (chordate pharynx)
derives from:FF:0100819 (pharyngeal cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006562 (pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.