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{{CL
{{CL
|id=CL:0000034
|alt_id=
|name=stem cell
|namespace=cell
|def="A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872]
|xref=FMA:63368
|is_a=CL:0000144
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000034
|is_a=CL:0000003
|is_obsolete=
|located_in=
|located_in=
|name=stem cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym=
|union_of=
|xref=FMA:63368
}}
}}

Latest revision as of 16:27, 12 September 2014

Name:stem cell
Namespace:FANTOM
Definition:"A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872]
Xrefs:
links:
FMA:63368


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000003(native cell)



Children


is a:CL:0000723 (somatic stem cell),CL:0002322 (embryonic stem cell)
derives from:FF:0000255 (mouse inner hair stem cell sample),FF:0000626 (trophoblast cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000034 (stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.28e-50FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_99d45f4a828f979912c140ca0bcd9bc5p2@EMP3
6.28e-50FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_99d45f4a828f979912c140ca0bcd9bc5p2@EMP3
2.07e-48FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_83bd3c8a0d3fd5458356a7b759dd4b96p2@ITGA4
2.07e-48FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_83bd3c8a0d3fd5458356a7b759dd4b96p2@ITGA4
4.04e-48FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_aff3f9a791c485dcb088f74515f95103p2@SEC22B
4.04e-48FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_aff3f9a791c485dcb088f74515f95103p2@SEC22B
2.81e-45FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_6ae0d0c9c77feabece35dbfa159776dap1@DOK1
2.81e-45FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_6ae0d0c9c77feabece35dbfa159776dap1@DOK1
1.99e-44FFCP PHASE2:Mm9::chr19:18807230..18807233,+#_4d36984376e8b64e1f20ae2fdaee8043p1@ENSMUST00000083007
1.99e-44FFCP PHASE1:Mm9::chr19:18807230..18807233,+#_4d36984376e8b64e1f20ae2fdaee8043p1@ENSMUST00000083007
9.15e-44FFCP PHASE1:Mm9::chr1:146456236..146456244,-#_603ab3441b0263c50d67d64b5255e8bap1@ENSMUST00000157471
9.15e-44FFCP PHASE2:Mm9::chr1:146456236..146456244,-#_603ab3441b0263c50d67d64b5255e8bap1@ENSMUST00000157471
8.75e-43FFCP PHASE1:Mm9::chr3:32910877..32910881,+#_9b2de709507ae253c98e92903f1c861fp1@ENSMUST00000122716
8.75e-43FFCP PHASE2:Mm9::chr3:32910877..32910881,+#_9b2de709507ae253c98e92903f1c861fp1@ENSMUST00000122716
1.09e-41FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_cf76accab7f6199d1aa05f4006815365p3@EMP3
1.09e-41FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_cf76accab7f6199d1aa05f4006815365p3@EMP3
1.54e-41FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_376aca33178474988f79edaa43f6c686p2@CLIC1
1.54e-41FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_376aca33178474988f79edaa43f6c686p2@CLIC1
9.24e-41FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_910e99e0a6f89e2fb78fa58437c22e2cp1@ARSB
9.24e-41FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_910e99e0a6f89e2fb78fa58437c22e2cp1@ARSB
1.2e-40FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_748580aec65a035479109e93d72fd539p1@ACTR3
1.2e-40FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_748580aec65a035479109e93d72fd539p1@ACTR3
1.37e-39FFCP PHASE1:Mm9::chr4:32085713..32085717,-#_ecedd6ac519aa9ec82f6449f6f561ba9p1@ENSMUST00000122491
1.37e-39FFCP PHASE2:Mm9::chr4:32085713..32085717,-#_ecedd6ac519aa9ec82f6449f6f561ba9p1@ENSMUST00000122491
2.57e-39FFCP PHASE1:Hg19::chr11:504446..504486,-#_0894102fe20d1dac7732f952c698af7fp4@RNH1
2.57e-39FFCP PHASE2:Hg19::chr11:504446..504486,-#_0894102fe20d1dac7732f952c698af7fp4@RNH1
3.91e-39FFCP PHASE1:Mm9::chr4:131826124..131826129,-#_8260206470f42ae13651b98b33b9f12ep1@ENSMUST00000104135
3.91e-39FFCP PHASE2:Mm9::chr4:131826124..131826129,-#_8260206470f42ae13651b98b33b9f12ep1@ENSMUST00000104135
6.79e-39FFCP PHASE1:Mm9::chr3:19460250..19460260,+#_4c12f24af5bcfde18d7b8bc22de7a5eap1@ENSMUST00000083241
6.79e-39FFCP PHASE2:Mm9::chr3:19460250..19460260,+#_4c12f24af5bcfde18d7b8bc22de7a5eap1@ENSMUST00000083241
1.41e-38FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_7625e9afd5ecd0e6a5a28e39c82c64f4p1@ADCY7
1.41e-38FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_7625e9afd5ecd0e6a5a28e39c82c64f4p1@ADCY7
4.4e-38FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_a38f4d2c8df216a834e719e5451e728fp4@ROCK1
4.4e-38FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_a38f4d2c8df216a834e719e5451e728fp4@ROCK1
8.07e-38FFCP PHASE2:Mm9::chr19:26334980..26334985,-#_9fbcd4f9fe0facabc4db60123a8c8619p1@ENSMUST00000122640
8.07e-38FFCP PHASE1:Mm9::chr19:26334980..26334985,-#_9fbcd4f9fe0facabc4db60123a8c8619p1@ENSMUST00000122640
1.19e-37FFCP PHASE2:Mm9::chr11:48596086..48596090,+#_49ea31cc17f6c8f59637bb9f129c0c62p@chr11:48596086..48596090, +
1.19e-37FFCP PHASE1:Mm9::chr11:48596086..48596090,+#_49ea31cc17f6c8f59637bb9f129c0c62p@chr11:48596086..48596090, +
1.72e-37FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_3f806aca252bd2b374b8fee242969812p1@ITGA4
1.72e-37FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_3f806aca252bd2b374b8fee242969812p1@ITGA4
7.4e-37FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_e60010f6ecbe88de32e739803f124e03p1@SLC17A9
7.4e-37FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_e60010f6ecbe88de32e739803f124e03p1@SLC17A9
1.7e-36FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_02e60d9d86d32ee37a721b4ee3d34661p1@ADPGK
1.7e-36FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_02e60d9d86d32ee37a721b4ee3d34661p1@ADPGK
1.96e-36FFCP PHASE1:Mm9::chr5:115939465..115939467,+#_13a3afab843d1ececc688627a2efa561p1@ENSMUST00000102044
1.96e-36FFCP PHASE2:Mm9::chr5:115939465..115939467,+#_13a3afab843d1ececc688627a2efa561p1@ENSMUST00000102044
2.38e-36FFCP PHASE2:Mm9::chr10:104477319..104477348,+#_34f5a173a748ca3ed3570427c1e7ede3p1@ENSMUST00000082498
2.38e-36FFCP PHASE1:Mm9::chr10:104477319..104477348,+#_34f5a173a748ca3ed3570427c1e7ede3p1@ENSMUST00000082498
4.2e-36FFCP PHASE2:Hg19::chr1:183604794..183604908,-#_381c869114de3544ec111d66fd55f5ffp1@ARPC5
4.2e-36FFCP PHASE1:Hg19::chr1:183604794..183604908,-#_381c869114de3544ec111d66fd55f5ffp1@ARPC5
4.29e-36FFCP PHASE1:Mm9::chr16:72264646..72264650,-#_3bbec27e120b10446af211a779e08e73p@chr16:72264646..72264650, -
4.29e-36FFCP PHASE2:Mm9::chr16:72264646..72264650,-#_3bbec27e120b10446af211a779e08e73p@chr16:72264646..72264650, -
5.67e-36FFCP PHASE2:Mm9::chr3:72925786..72925790,+#_f5cf21a12ffc6e2c67165a418925ec73p@chr3:72925786..72925790, +
5.67e-36FFCP PHASE1:Mm9::chr3:72925786..72925790,+#_f5cf21a12ffc6e2c67165a418925ec73p@chr3:72925786..72925790, +
7.73e-36FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_0b5c87d34593483553062ecdb919b857p3@ANPEP
7.73e-36FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_0b5c87d34593483553062ecdb919b857p3@ANPEP
9.41e-36FFCP PHASE2:Hg19::chr12:110888103..110888172,-#_c9c57f552251551c9756cebb195708d9p1@ARPC3
9.41e-36FFCP PHASE1:Hg19::chr12:110888103..110888172,-#_c9c57f552251551c9756cebb195708d9p1@ARPC3
1.48e-35FFCP PHASE2:Mm9::chr14:106660467..106660471,-#_436043f9b28c98037198da0d338edbaep1@ENSMUST00000083259
1.48e-35FFCP PHASE1:Mm9::chr14:106660467..106660471,-#_436043f9b28c98037198da0d338edbaep1@ENSMUST00000083259
1.52e-35FFCP PHASE2:Hg19::chr1:145096514..145096528,+#_ace4e7c3468aabd652e61484163377a5p3@SEC22B
1.52e-35FFCP PHASE1:Hg19::chr1:145096514..145096528,+#_ace4e7c3468aabd652e61484163377a5p3@SEC22B
3.22e-35FFCP PHASE1:Mm9::chr11:68886926..68886931,+#_c81128b8bb366be4b3c1388b769d56aep1@ENSMUST00000082965
3.22e-35FFCP PHASE2:Mm9::chr11:68886926..68886931,+#_c81128b8bb366be4b3c1388b769d56aep1@ENSMUST00000082965
3.55e-35FFCP PHASE1:Hg19::chr12:75874580..75874611,+#_2c540ab74538a1768c1d1686842f1c89p2@GLIPR1
3.55e-35FFCP PHASE2:Hg19::chr12:75874580..75874611,+#_2c540ab74538a1768c1d1686842f1c89p2@GLIPR1
4.93e-35FFCP PHASE1:Hg19::chr2:102091566..102091581,-#_b67e290c205c9ae325724f95d3323886p1@RFX8
4.93e-35FFCP PHASE2:Hg19::chr2:102091566..102091581,-#_b67e290c205c9ae325724f95d3323886p1@RFX8
1.03e-34FFCP PHASE2:Hg19::chr1:46016703..46016755,+#_c57cd2fbef9bb47cc5ff61677f1e6b17p2@AKR1A1
1.03e-34FFCP PHASE1:Hg19::chr1:46016703..46016755,+#_c57cd2fbef9bb47cc5ff61677f1e6b17p2@AKR1A1
2.43e-34FFCP PHASE2:Hg19::chr11:504867..504925,-#_be2f43d5bafe9e0c1832dd9fc9be5e41p3@RNH1
2.43e-34FFCP PHASE1:Hg19::chr11:504867..504925,-#_be2f43d5bafe9e0c1832dd9fc9be5e41p3@RNH1
2.47e-34FFCP PHASE1:Hg19::chr9:35112376..35112395,-#_9dc4c2b2c5f7641f21dc8d866c3bb855p@chr9:35112376..35112395, -
2.47e-34FFCP PHASE2:Hg19::chr9:35112376..35112395,-#_9dc4c2b2c5f7641f21dc8d866c3bb855p@chr9:35112376..35112395, -
4.52e-34FFCP PHASE2:Hg19::chr9:101984577..101984616,+#_052f043ea02ac9f2188619e2ef98e4fbp2@SEC61B
4.52e-34FFCP PHASE1:Hg19::chr9:101984577..101984616,+#_052f043ea02ac9f2188619e2ef98e4fbp2@SEC61B
4.61e-34FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_e38d50b6e8eee72da7a469a44f3c1cccp1@ANPEP
4.61e-34FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_e38d50b6e8eee72da7a469a44f3c1cccp1@ANPEP
5.21e-34FFCP PHASE2:Hg19::chrX:48432892..48432916,+#_441a7918b12f2b6e9e45290864386a87p1@RBM3
5.21e-34FFCP PHASE1:Hg19::chrX:48432892..48432916,+#_441a7918b12f2b6e9e45290864386a87p1@RBM3
1.84e-33FFCP PHASE2:Hg19::chr11:504942..504959,-#_876ea0a91bf74c4ce9958dec0de397a8p5@RNH1
1.84e-33FFCP PHASE1:Hg19::chr11:504942..504959,-#_876ea0a91bf74c4ce9958dec0de397a8p5@RNH1
2.03e-33FFCP PHASE2:Hg19::chr21:26934434..26934452,+#_ebe6e31522490dfd3a631400f6472548p1@MIR155HG
2.03e-33FFCP PHASE1:Hg19::chr21:26934434..26934452,+#_ebe6e31522490dfd3a631400f6472548p1@MIR155HG
2.43e-33FFCP PHASE2:Hg19::chr10:17271909..17272033,-#_8148d92ce5cfbc18dd4f8dc9e7db7be4p1@uc001iot.1
2.43e-33FFCP PHASE1:Hg19::chr10:17271909..17272033,-#_8148d92ce5cfbc18dd4f8dc9e7db7be4p1@uc001iot.1
2.52e-33FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_a71122ef6b5eb4206cab4eff11a79ca3p@chr2:192542577..192542595, -
2.52e-33FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_a71122ef6b5eb4206cab4eff11a79ca3p@chr2:192542577..192542595, -
5.08e-33FFCP PHASE2:Mm9::chr4:33051742..33051793,+#_bb81484b456e28595ac794c8fa7cad03p1@ENSMUST00000077575
5.08e-33FFCP PHASE1:Mm9::chr4:33051742..33051793,+#_bb81484b456e28595ac794c8fa7cad03p1@ENSMUST00000077575
5.11e-33FFCP PHASE1:Hg19::chr11:58345226..58345262,+#_277b9c9b7ad481ab67a178611bacffedp@chr11:58345226..58345262, +
5.11e-33FFCP PHASE2:Hg19::chr11:58345226..58345262,+#_277b9c9b7ad481ab67a178611bacffedp@chr11:58345226..58345262, +
7.22e-33FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_83a35513c9c40fa732f5d59e7524c3c2p2@DDOST
7.22e-33FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_83a35513c9c40fa732f5d59e7524c3c2p2@DDOST
8.55e-33FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_8fe161314e880908df1706a2b5c7906dp2@RASSF1
8.55e-33FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_8fe161314e880908df1706a2b5c7906dp2@RASSF1
1.14e-32FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_0c4592d8cb8da334bb74468b2f9b75d7p4@UBE2D3
1.14e-32FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_0c4592d8cb8da334bb74468b2f9b75d7p4@UBE2D3
1.35e-32FFCP PHASE2:Mm9::chr11:68834407..68834410,+#_2b723abca78ecac6585175ee4faafc93p@chr11:68834407..68834410, +
1.35e-32FFCP PHASE1:Mm9::chr11:68834407..68834410,+#_2b723abca78ecac6585175ee4faafc93p@chr11:68834407..68834410, +

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