CL:0000051: Difference between revisions
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|located_in= | |located_in= | ||
|name=common lymphoid progenitor | |name=common lymphoid progenitor | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:28, 12 September 2014
| Name: | common lymphoid progenitor |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A oligopotent progenitor cell committed to the lymphoid lineage." [GOC:add, GOC:dsd, GOC:tfm, PMID:10407577, PMID:16551251] |
| Synonyms: |
"CLP" EXACT [] "committed lymphopoietic stem cell" RELATED [] "common lymphocyte precursor" EXACT [] "common lymphocyte progenitor" EXACT [] "common lymphoid precursor" EXACT [] "early lymphocyte progenitor" RELATED [] "ELP" RELATED [] "lymphoid stem cell" RELATED [] "lymphopoietic stem cell" RELATED [] |
| Comments: | CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative. |
| Alt_id: | CL:0000044 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002032(hematopoietic oligopotent progenitor cell) |
|---|
Children
| disjoint from: | CL:0000049 (common myeloid progenitor) |
|---|---|
| develops from: | CL:0000542 (lymphocyte),CL:0000825 (pro-NK cell),CL:0000826 (pro-B cell),CL:0000827 (pro-T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000051 (common lymphoid progenitor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.13e-82 | FFCP PHASE2:Hg19::chr5:150521260..150521277,-#_12273b98a1733528fe967a17c35b8d6e | p5@ANXA6 |
| 2.13e-82 | FFCP PHASE1:Hg19::chr5:150521260..150521277,-#_12273b98a1733528fe967a17c35b8d6e | p5@ANXA6 |
| 3.17e-82 | FFCP PHASE2:Hg19::chr11:67206142..67206156,-#_9871f788cee925c362976be782eccf93 | p@chr11:67206142..67206156, - |
| 3.17e-82 | FFCP PHASE1:Hg19::chr11:67206142..67206156,-#_9871f788cee925c362976be782eccf93 | p@chr11:67206142..67206156, - |
| 6.87e-78 | FFCP PHASE1:Hg19::chr12:9822355..9822366,+#_90c63f745b2fc35da8f8635a49c47e9c | p3@CLEC2D |
| 6.87e-78 | FFCP PHASE2:Hg19::chr12:9822355..9822366,+#_90c63f745b2fc35da8f8635a49c47e9c | p3@CLEC2D |
| 8.78e-77 | FFCP PHASE2:Hg19::chr9:35650572..35650659,-#_b1400c8440a631e060b0d4937fa83bba | p2@SIT1 |
| 8.78e-77 | FFCP PHASE1:Hg19::chr9:35650572..35650659,-#_b1400c8440a631e060b0d4937fa83bba | p2@SIT1 |
| 1.12e-76 | FFCP PHASE2:Hg19::chr9:140356580..140356585,+#_5b193074986188dfc21b599ca885e7bd | p@chr9:140356580..140356585, + |
| 1.12e-76 | FFCP PHASE1:Hg19::chr9:140356580..140356585,+#_5b193074986188dfc21b599ca885e7bd | p@chr9:140356580..140356585, + |
| 9.3e-76 | FFCP PHASE1:Hg19::chr17:37934188..37934202,-#_a42511396c462029edf5a3c3d03c2f00 | p8@IKZF3 |
| 9.3e-76 | FFCP PHASE2:Hg19::chr17:37934188..37934202,-#_a42511396c462029edf5a3c3d03c2f00 | p8@IKZF3 |
| 1.29e-75 | FFCP PHASE2:Hg19::chr11:118754537..118754552,+#_944a418b9ec8bfafd80274d37b90d60d | p3@CXCR5 |
| 1.29e-75 | FFCP PHASE1:Hg19::chr11:118754537..118754552,+#_944a418b9ec8bfafd80274d37b90d60d | p3@CXCR5 |
| 1.3e-75 | FFCP PHASE2:Hg19::chr17:38020481..38020506,-#_091cdf7e5aa9f32da0ef8c53cc906abd | p7@IKZF3 |
| 1.3e-75 | FFCP PHASE1:Hg19::chr17:38020481..38020506,-#_091cdf7e5aa9f32da0ef8c53cc906abd | p7@IKZF3 |
| 2.49e-75 | FFCP PHASE1:Hg19::chr1:207096529..207096554,-#_0651a8680660a94e0fca5d1bbb944c74 | p5@FAIM3 |
| 2.49e-75 | FFCP PHASE2:Hg19::chr1:207096529..207096554,-#_0651a8680660a94e0fca5d1bbb944c74 | p5@FAIM3 |
| 7.9e-73 | FFCP PHASE2:Hg19::chr1:27953007..27953025,-#_f6328af2e01596a86224dabd4894a19c | p12@FGR |
| 7.9e-73 | FFCP PHASE1:Hg19::chr1:27953007..27953025,-#_f6328af2e01596a86224dabd4894a19c | p12@FGR |
| 7.87e-72 | FFCP PHASE1:Hg19::chr6:31540403..31540430,-#_0d9a92e6ac4630421a2b3194c09f436a | p1@LOC100287329 |
| 7.87e-72 | FFCP PHASE2:Hg19::chr6:31540403..31540430,-#_0d9a92e6ac4630421a2b3194c09f436a | p1@LOC100287329 |
| 2.14e-71 | FFCP PHASE1:Hg19::chr14:20811696..20811707,+#_31d9387bfbe031ad80d3c91fbd6f63bf | p4@PARP2 |
| 2.14e-71 | FFCP PHASE2:Hg19::chr14:20811696..20811707,+#_31d9387bfbe031ad80d3c91fbd6f63bf | p4@PARP2 |
| 2.73e-71 | FFCP PHASE1:Hg19::chr17:38020607..38020621,-#_042476cde7ec12d7b07c68570e677bd0 | p9@IKZF3 |
| 2.73e-71 | FFCP PHASE2:Hg19::chr17:38020607..38020621,-#_042476cde7ec12d7b07c68570e677bd0 | p9@IKZF3 |
| 5.67e-71 | FFCP PHASE1:Hg19::chr8:71564073..71564104,+#_267ce9af9d0364bac16bb8830154c11b | p@chr8:71564073..71564104, + |
| 5.67e-71 | FFCP PHASE2:Hg19::chr8:71564073..71564104,+#_267ce9af9d0364bac16bb8830154c11b | p@chr8:71564073..71564104, + |
| 1.15e-70 | FFCP PHASE2:Hg19::chr11:64107589..64107604,-#_5f0895b225b7cc30ace8adf6e054be3b | p@chr11:64107589..64107604, - |
| 1.15e-70 | FFCP PHASE1:Hg19::chr11:64107589..64107604,-#_5f0895b225b7cc30ace8adf6e054be3b | p@chr11:64107589..64107604, - |
| 1.75e-70 | FFCP PHASE2:Hg19::chr17:37934204..37934241,-#_ea2bbd8217c0a5a85d68a2ce831ce734 | p3@IKZF3 |
| 1.75e-70 | FFCP PHASE1:Hg19::chr17:37934204..37934241,-#_ea2bbd8217c0a5a85d68a2ce831ce734 | p3@IKZF3 |
| 5.83e-70 | FFCP PHASE2:Hg19::chr3:107844539..107844555,-#_9176c5e37bfce914b95fd9f3d513ebbb | p@chr3:107844539..107844555, - |
| 5.83e-70 | FFCP PHASE1:Hg19::chr3:107844539..107844555,-#_9176c5e37bfce914b95fd9f3d513ebbb | p@chr3:107844539..107844555, - |
| 6.85e-70 | FFCP PHASE1:Hg19::chr14:23000807..23000874,+#_88cb65d9e8457c329d2e17ce1ff3798a | p1@TRAJ12 |
| 6.85e-70 | FFCP PHASE2:Hg19::chr14:23000807..23000874,+#_88cb65d9e8457c329d2e17ce1ff3798a | p1@TRAJ12 |
| 9.9e-70 | FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_6be8f1895456268501e4991ebfbce540 | p2@CU689419 |
| 9.9e-70 | FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_6be8f1895456268501e4991ebfbce540 | p2@CU689419 |
| 2.85e-69 | FFCP PHASE1:Hg19::chr17:38020557..38020572,-#_769368fcd1fa10c7346e16af4bdbc41f | p4@IKZF3 |
| 2.85e-69 | FFCP PHASE2:Hg19::chr17:38020557..38020572,-#_769368fcd1fa10c7346e16af4bdbc41f | p4@IKZF3 |
| 3.14e-69 | FFCP PHASE2:Hg19::chr5:150521234..150521251,-#_87bd3b67701db323c3737fee58a30b00 | p4@ANXA6 |
| 3.14e-69 | FFCP PHASE1:Hg19::chr5:150521234..150521251,-#_87bd3b67701db323c3737fee58a30b00 | p4@ANXA6 |
| 5.7e-69 | FFCP PHASE1:Hg19::chr19:39108644..39108658,-#_af6a9c24fafc7e4d4932f7b4ca8fe137 | p2@MAP4K1 |
| 5.7e-69 | FFCP PHASE2:Hg19::chr19:39108644..39108658,-#_af6a9c24fafc7e4d4932f7b4ca8fe137 | p2@MAP4K1 |
| 1.0e-68 | FFCP PHASE2:Hg19::chr17:38020516..38020544,-#_5e335da75e465498ff8b7e25ce40315d | p5@IKZF3 |
| 1.0e-68 | FFCP PHASE1:Hg19::chr17:38020516..38020544,-#_5e335da75e465498ff8b7e25ce40315d | p5@IKZF3 |
| 2.01e-68 | FFCP PHASE1:Hg19::chr1:207096678..207096699,+#_d5d6d87784db40944bb0bf989ed5fc46 | p@chr1:207096678..207096699, + |
| 2.01e-68 | FFCP PHASE2:Hg19::chr1:207096678..207096699,+#_d5d6d87784db40944bb0bf989ed5fc46 | p@chr1:207096678..207096699, + |
| 8.76e-68 | FFCP PHASE2:Hg19::chr7:50348268..50348366,+#_7928539f173b95102bafe18635529c83 | p4@IKZF1 |
| 8.76e-68 | FFCP PHASE1:Hg19::chr7:50348268..50348366,+#_7928539f173b95102bafe18635529c83 | p4@IKZF1 |
| 1.11e-67 | FFCP PHASE2:Hg19::chr11:67203630..67203643,-#_a684453f2a5e6fedd67af866e5fe764d | p2@PTPRCAP |
| 1.11e-67 | FFCP PHASE1:Hg19::chr11:67203630..67203643,-#_a684453f2a5e6fedd67af866e5fe764d | p2@PTPRCAP |
| 2.67e-67 | FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_85dab843ac32c8dcd7cb1b008a7baae1 | p@chr4:32335511..32335532, + |
| 2.67e-67 | FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_85dab843ac32c8dcd7cb1b008a7baae1 | p@chr4:32335511..32335532, + |
| 8.25e-67 | FFCP PHASE2:Hg19::chr13:30951074..30951122,-#_8396ae5124cea8d360d67b97f93d72c4 | p1@LINC00426 |
| 8.25e-67 | FFCP PHASE1:Hg19::chr13:30951074..30951122,-#_8396ae5124cea8d360d67b97f93d72c4 | p1@LINC00426 |
| 8.97e-67 | FFCP PHASE2:Hg19::chr18:60825437..60825471,-#_cd3f2f5f8bc8a668dc56b660e910137a | p@chr18:60825437..60825471, - |
| 8.97e-67 | FFCP PHASE1:Hg19::chr18:60825437..60825471,-#_cd3f2f5f8bc8a668dc56b660e910137a | p@chr18:60825437..60825471, - |
| 1.18e-66 | FFCP PHASE1:Hg19::chr8:28747682..28747705,-#_e22c587125abd623130560e8476a51e0 | p2@INTS9 |
| 1.18e-66 | FFCP PHASE2:Hg19::chr8:28747682..28747705,-#_e22c587125abd623130560e8476a51e0 | p2@INTS9 |
| 1.3e-66 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_51446c338142d253b86571136ce0e5d8 | p@chr5:123440767..123440778, + |
| 1.3e-66 | FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_51446c338142d253b86571136ce0e5d8 | p@chr7:132751140..132751183, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_51446c338142d253b86571136ce0e5d8 | p@chr4:32422919..32422935, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_51446c338142d253b86571136ce0e5d8 | p@chr7:132751140..132751183, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_51446c338142d253b86571136ce0e5d8 | p@chr6:99215016..99215036, + |
| 1.3e-66 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_51446c338142d253b86571136ce0e5d8 | p@chr6:99215016..99215036, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_51446c338142d253b86571136ce0e5d8 | p@chr5:123440486..123440504, - |
| 1.3e-66 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_51446c338142d253b86571136ce0e5d8 | p@chr5:123440486..123440504, - |
| 1.3e-66 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_51446c338142d253b86571136ce0e5d8 | p@chr4:32422919..32422935, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_51446c338142d253b86571136ce0e5d8 | p@chr5:123440767..123440778, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:37934280..37934299,-#_366835de3f40311d2cff838607da28cb | p6@IKZF3 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:37934280..37934299,-#_366835de3f40311d2cff838607da28cb | p6@IKZF3 |
| 2.74e-66 | FFCP PHASE2:Hg19::chr22:24823517..24823546,+#_027d7ee4672a6615d6da9071f066fd54 | p5@ADORA2A |
| 2.74e-66 | FFCP PHASE1:Hg19::chr22:24823517..24823546,+#_027d7ee4672a6615d6da9071f066fd54 | p5@ADORA2A |
| 2.91e-66 | FFCP PHASE2:Hg19::chr11:64107610..64107648,-#_5682e34c1f3ec8dedac1767b065ad0e4 | p@chr11:64107610..64107648, - |
| 2.91e-66 | FFCP PHASE1:Hg19::chr11:64107610..64107648,-#_5682e34c1f3ec8dedac1767b065ad0e4 | p@chr11:64107610..64107648, - |
| 3.71e-66 | FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_4b71f98f8da93b06edf5877a0ca24b22 | p@chr9:37037005..37037011, + |
| 3.71e-66 | FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_4b71f98f8da93b06edf5877a0ca24b22 | p@chr9:37037005..37037011, + |
| 1.64e-65 | FFCP PHASE1:Hg19::chr4:40198602..40198614,+#_6423826807d77cefa2bd2ebc6f604063 | p3@RHOH |
| 1.64e-65 | FFCP PHASE2:Hg19::chr4:40198602..40198614,+#_6423826807d77cefa2bd2ebc6f604063 | p3@RHOH |
| 2.06e-65 | FFCP PHASE1:Hg19::chr6:159528034..159528048,+#_7d2066fa5fb8fa3e1108ba030f551e99 | p@chr6:159528034..159528048, + |
| 2.06e-65 | FFCP PHASE2:Hg19::chr6:159528034..159528048,+#_7d2066fa5fb8fa3e1108ba030f551e99 | p@chr6:159528034..159528048, + |
| 3.38e-65 | FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_5140abb2db8e89c118574e5cbcae72c6 | p@chr22:50318813..50318835, + |
| 3.38e-65 | FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_5140abb2db8e89c118574e5cbcae72c6 | p@chr22:50318813..50318835, + |
| 5.98e-65 | FFCP PHASE2:Hg19::chr17:43487780..43487792,-#_ffdde82e7eeb0c8b2ffba2fd2e6e582e | p5@ARHGAP27 |
| 5.98e-65 | FFCP PHASE1:Hg19::chr17:43487780..43487792,-#_ffdde82e7eeb0c8b2ffba2fd2e6e582e | p5@ARHGAP27 |
| 6.07e-65 | FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_8a72cd43772b448f52044779ffe9df17 | p@chr12:111106975..111106991, - |
| 6.07e-65 | FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_8a72cd43772b448f52044779ffe9df17 | p@chr12:111106975..111106991, - |
| 6.91e-65 | FFCP PHASE1:Hg19::chr12:9822334..9822351,+#_f3221fe7e2dd4cca0ff54be37a01fe65 | p2@CLEC2D |
| 6.91e-65 | FFCP PHASE2:Hg19::chr12:9822334..9822351,+#_f3221fe7e2dd4cca0ff54be37a01fe65 | p2@CLEC2D |
| 1.1e-64 | FFCP PHASE1:Hg19::chr17:37917880..37917904,-#_1f5beaa7f8024df1b93efaeb00f99611 | p1@AK128436 |
| 1.1e-64 | FFCP PHASE2:Hg19::chr17:37917880..37917904,-#_1f5beaa7f8024df1b93efaeb00f99611 | p1@AK128436 |
| 1.11e-64 | FFCP PHASE2:Hg19::chr17:66176843..66176848,+#_05222c1503d5fc04c990ca1e928ef751 | p@chr17:66176843..66176848, + |
| 1.11e-64 | FFCP PHASE1:Hg19::chr17:66176843..66176848,+#_05222c1503d5fc04c990ca1e928ef751 | p@chr17:66176843..66176848, + |
| 1.25e-64 | FFCP PHASE2:Hg19::chr9:98257510..98257517,-#_184d929e35b523ddb1bcc9a722d4fbfb | p@chr9:98257510..98257517, - |
| 1.25e-64 | FFCP PHASE1:Hg19::chr9:98257510..98257517,-#_184d929e35b523ddb1bcc9a722d4fbfb | p@chr9:98257510..98257517, - |
| 1.33e-64 | FFCP PHASE1:Hg19::chr1:207085241..207085281,-#_9993875c82a7170903151bcbce0ba36e | p@chr1:207085241..207085281, - |
| 1.33e-64 | FFCP PHASE2:Hg19::chr1:207085241..207085281,-#_9993875c82a7170903151bcbce0ba36e | p@chr1:207085241..207085281, - |
| 1.78e-64 | FFCP PHASE2:Hg19::chr9:35650900..35650967,-#_88d9a3497aa56c26583ea0b3ed5660f6 | p1@SIT1 |
| 1.78e-64 | FFCP PHASE1:Hg19::chr9:35650900..35650967,-#_88d9a3497aa56c26583ea0b3ed5660f6 | p1@SIT1 |
