CL:0000120: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000120 | |||
|is_a=CL:0000117 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=granule cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0003393 | |||
}} | }} | ||
Latest revision as of 16:30, 12 September 2014
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000117(CNS neuron (sensu Vertebrata)) |
|---|
Children
| is a: | CL:0001031 (cerebellar granule cell) |
|---|---|
| derives from: | FF:0000108 (mouse granule cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11656-122E9
- 11713-123C3 (Mouse Granule cells, donor1)
- 11731-123E3 (Mouse Granule cells, donor2)
- 13532-145G4 (cerebellar granule cells, embryo E13, biol_rep1 (E13R1))
- 13533-145G5 (cerebellar granule cells, embryo E13, biol_rep2 (E13R2))
- 13534-145G6 (cerebellar granule cells, embryo E13, biol_rep3 (E13R3))
- 13535-145G7 (cerebellar granule cells, embryo E15, biol_rep1 (E15R1))
... further results Mouse (Mus musculus)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11656-122E9
- 11713-123C3 (Mouse Granule cells, donor1)
- 11731-123E3 (Mouse Granule cells, donor2)
- 13532-145G4 (cerebellar granule cells, embryo E13, biol_rep1 (E13R1))
- 13533-145G5 (cerebellar granule cells, embryo E13, biol_rep2 (E13R2))
- 13534-145G6 (cerebellar granule cells, embryo E13, biol_rep3 (E13R3))
- 13535-145G7 (cerebellar granule cells, embryo E15, biol_rep1 (E15R1))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000120 (granule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
