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{{CL
{{CL
|id=CL:0000125
|alt_id=
|name=glial cell
|namespace=efo
|def="A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [MESH:A.08.637]
|xref=BTO:0002606;;FMA:54536
|is_a=CL:0000095;;EFO:0002963
|synonym="neuroglia" RELATED [];;"neuroglial cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [MESH:A.08.637]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000030
|develops_from=CL:0000030
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000125
|is_a=CL:0000095
|is_obsolete=
|located_in=
|located_in=
|name=glial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="neuroglia" RELATED [];;"neuroglial cell" EXACT []
|union_of=
|xref=BTO:0002606;;FMA:54536
}}
}}

Latest revision as of 16:30, 12 September 2014

Name:glial cell
Namespace:FANTOM
Definition:"A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [MESH:A.08.637]
Xrefs:
links:

BTO:0002606

FMA:54536
Synonyms: "neuroglia" RELATED []
"neuroglial cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000095(neuron associated cell)
develops_from:CL:0000030(glioblast)



Children


is a:CL:0000243 (glial cell (sensu Vertebrata)),CL:1001579 (cerebral cortex glial cell),CL:1001580 (hippocampus glial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000125 (glial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.33e-61FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_af9a988061ea4fafe6cc0a2c67a43e60p@chr8:28132545..28132551, +
8.33e-61FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_af9a988061ea4fafe6cc0a2c67a43e60p@chr8:28132545..28132551, +
8.33e-61FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_af9a988061ea4fafe6cc0a2c67a43e60p@chr1:72873192..72873206, +
8.33e-61FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_af9a988061ea4fafe6cc0a2c67a43e60p@chr1:72873192..72873206, +
2.99e-58FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_38fb51eb066766d89754a03abc11b62dp@chr4:169553987..169553999, +
2.99e-58FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_38fb51eb066766d89754a03abc11b62dp@chr4:169553987..169553999, +
1.74e-53FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_8e728b9988384c9c84e44c17c2219f75p14@Slc3a2
1.74e-53FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_8e728b9988384c9c84e44c17c2219f75p14@Slc3a2
3.55e-53FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_213663c7ad1c4ad555a0bd41cf036c95p@chr8:11006242..11006246, -
3.55e-53FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_213663c7ad1c4ad555a0bd41cf036c95p@chr8:11006242..11006246, -
8.65e-48FFCP PHASE2:Mm9::chr8:96677906..96677921,-#_6ed56a7376ce42ac4669f56bfe779237p@chr8:96677906..96677921, -
8.65e-48FFCP PHASE1:Mm9::chr19:8788794..8788806,-#_6ed56a7376ce42ac4669f56bfe779237p6@Slc3a2
8.65e-48FFCP PHASE2:Mm9::chr3:121130390..121130408,-#_6ed56a7376ce42ac4669f56bfe779237p@chr3:121130390..121130408, -
8.65e-48FFCP PHASE2:Mm9::chr8:96677795..96677811,+#_6ed56a7376ce42ac4669f56bfe779237p@chr8:96677795..96677811, +
8.65e-48FFCP PHASE1:Mm9::chr8:96677795..96677811,+#_6ed56a7376ce42ac4669f56bfe779237p@chr8:96677795..96677811, +
8.65e-48FFCP PHASE1:Mm9::chr3:121130390..121130408,-#_6ed56a7376ce42ac4669f56bfe779237p@chr3:121130390..121130408, -
8.65e-48FFCP PHASE1:Mm9::chr8:96677906..96677921,-#_6ed56a7376ce42ac4669f56bfe779237p@chr8:96677906..96677921, -
8.65e-48FFCP PHASE2:Mm9::chr19:8788794..8788806,-#_6ed56a7376ce42ac4669f56bfe779237p6@Slc3a2
1.01e-47FFCP PHASE2:Mm9::chr11:102758074..102758083,+#_6b4511e75ffdf93f3248ac7bd058c123p@chr11:102758074..102758083, +
1.01e-47FFCP PHASE1:Mm9::chr3:89028994..89029006,+#_6b4511e75ffdf93f3248ac7bd058c123p5@Thbs3
1.01e-47FFCP PHASE1:Mm9::chr11:102758074..102758083,+#_6b4511e75ffdf93f3248ac7bd058c123p@chr11:102758074..102758083, +
1.01e-47FFCP PHASE2:Mm9::chr3:89028994..89029006,+#_6b4511e75ffdf93f3248ac7bd058c123p5@Thbs3
1.39e-47FFCP PHASE1:Mm9::chr14:122864178..122864180,+#_6f7a7cfc7b754734f2dbaf61bee57802p@chr14:122864178..122864180, +
1.39e-47FFCP PHASE2:Mm9::chr14:122864178..122864180,+#_6f7a7cfc7b754734f2dbaf61bee57802p@chr14:122864178..122864180, +
2.04e-46FFCP PHASE1:Hg19::chr1:98642833..98642844,+#_b08fe39fe776950845d0fddfac263fb6p@chr1:98642833..98642844, +
2.04e-46FFCP PHASE2:Hg19::chr1:98642833..98642844,+#_b08fe39fe776950845d0fddfac263fb6p@chr1:98642833..98642844, +
4.52e-45FFCP PHASE2:Mm9::chr9:37174919..37174932,+#_5cfaf6f220e49dd8459e2995baf7c0bbp3@Hepacam
4.52e-45FFCP PHASE1:Mm9::chr11:102807862..102807882,-#_5cfaf6f220e49dd8459e2995baf7c0bbp4@C1ql1
4.52e-45FFCP PHASE1:Mm9::chr9:37174919..37174932,+#_5cfaf6f220e49dd8459e2995baf7c0bbp3@Hepacam
4.52e-45FFCP PHASE2:Mm9::chr11:102807862..102807882,-#_5cfaf6f220e49dd8459e2995baf7c0bbp4@C1ql1
5.38e-45FFCP PHASE1:Mm9::chr11:102754827..102754845,-#_fd118f0d0397465257562bf42aabdb36p@chr11:102754827..102754845, -
5.38e-45FFCP PHASE2:Mm9::chr11:102754827..102754845,-#_fd118f0d0397465257562bf42aabdb36p@chr11:102754827..102754845, -
7.62e-45FFCP PHASE2:Mm9::chr14:70592626..70592638,-#_0ccb252c50d809af1a5a8fde26b99d5cp@chr14:70592626..70592638, -
7.62e-45FFCP PHASE1:Mm9::chr14:70592626..70592638,-#_0ccb252c50d809af1a5a8fde26b99d5cp@chr14:70592626..70592638, -
8.43e-44FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_2eaaddf0228c094881a14233114d4861p@chr11:102749254..102749263, -
8.43e-44FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_2eaaddf0228c094881a14233114d4861p@chr11:102749254..102749263, -
8.43e-44FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_2eaaddf0228c094881a14233114d4861p@chr11:75244815..75244826, -
8.43e-44FFCP PHASE1:Mm9::chr3:88990698..88990709,+#_2eaaddf0228c094881a14233114d4861p@chr3:88990698..88990709, +
8.43e-44FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_2eaaddf0228c094881a14233114d4861p@chr11:75244815..75244826, -
8.43e-44FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_2eaaddf0228c094881a14233114d4861p@chr16:15895800..15895814, -
8.43e-44FFCP PHASE2:Mm9::chr3:88990698..88990709,+#_2eaaddf0228c094881a14233114d4861p@chr3:88990698..88990709, +
8.43e-44FFCP PHASE1:Mm9::chr8:73022520..73022524,+#_2eaaddf0228c094881a14233114d4861p@chr8:73022520..73022524, +
8.43e-44FFCP PHASE2:Mm9::chr8:73022520..73022524,+#_2eaaddf0228c094881a14233114d4861p@chr8:73022520..73022524, +
8.43e-44FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_2eaaddf0228c094881a14233114d4861p@chr16:15895800..15895814, -
3.14e-43FFCP PHASE2:Mm9::chr8:96676892..96676904,+#_656ef3dff69f6922eea8488cb29af4dep@chr8:96676892..96676904, +
3.14e-43FFCP PHASE1:Mm9::chr8:96676892..96676904,+#_656ef3dff69f6922eea8488cb29af4dep@chr8:96676892..96676904, +
3.14e-43FFCP PHASE1:Mm9::chr8:93340930..93340944,-#_656ef3dff69f6922eea8488cb29af4dep@chr8:93340930..93340944, -
3.14e-43FFCP PHASE2:Mm9::chr8:93340930..93340944,-#_656ef3dff69f6922eea8488cb29af4dep@chr8:93340930..93340944, -
3.62e-43FFCP PHASE1:Mm9::chr3:89030096..89030118,+#_bdb2d7a610ac36062827d0eb1b33c9a1p4@Thbs3
3.62e-43FFCP PHASE2:Mm9::chr3:89030096..89030118,+#_bdb2d7a610ac36062827d0eb1b33c9a1p4@Thbs3
4.82e-43FFCP PHASE1:Mm9::chr12:112910294..112910300,-#_97d8165e7cfe172c350781904930a233p@chr12:112910294..112910300, -
4.82e-43FFCP PHASE2:Mm9::chr12:112910294..112910300,-#_97d8165e7cfe172c350781904930a233p@chr12:112910294..112910300, -
5.57e-43FFCP PHASE1:Mm9::chr11:102755848..102755857,-#_6407fa5cd33313cfb76ec93348816495p@chr11:102755848..102755857, -
5.57e-43FFCP PHASE2:Mm9::chr11:102755848..102755857,-#_6407fa5cd33313cfb76ec93348816495p@chr11:102755848..102755857, -
1.31e-42FFCP PHASE2:Mm9::chr7:148211055..148211073,+#_bd365b0d9f322403dd6b0d7e1c748e79p@chr7:148211055..148211073, +
1.31e-42FFCP PHASE1:Mm9::chr7:148211055..148211073,+#_bd365b0d9f322403dd6b0d7e1c748e79p@chr7:148211055..148211073, +
2.31e-42FFCP PHASE2:Mm9::chr2:11261132..11261153,+#_8e974e30c3987b819b12c6bac68a4034p2@Gm13293
2.31e-42FFCP PHASE1:Mm9::chr2:11261132..11261153,+#_8e974e30c3987b819b12c6bac68a4034p2@Gm13293
1.6e-40FFCP PHASE2:Mm9::chr1:174128350..174128367,+#_9eb988f0e1933cb4670273510ed05513p@chr1:174128350..174128367, +
1.6e-40FFCP PHASE1:Mm9::chr1:174128350..174128367,+#_9eb988f0e1933cb4670273510ed05513p@chr1:174128350..174128367, +
7.38e-40FFCP PHASE1:Mm9::chr1:72895848..72895864,+#_b373abbc14282afc29cff46657b36906p@chr1:72895848..72895864, +
7.38e-40FFCP PHASE2:Mm9::chr1:72895848..72895864,+#_b373abbc14282afc29cff46657b36906p@chr1:72895848..72895864, +
1.17e-39FFCP PHASE1:Mm9::chr3:88990668..88990679,+#_53440c1b3adbaddd5136e731c99429fep@chr3:88990668..88990679, +
1.17e-39FFCP PHASE2:Mm9::chr3:88990668..88990679,+#_53440c1b3adbaddd5136e731c99429fep@chr3:88990668..88990679, +
1.59e-39FFCP PHASE2:Mm9::chr19:8788690..8788697,-#_716c72a2b858bb8f881caf4af94b8d28p17@Slc3a2
1.59e-39FFCP PHASE1:Mm9::chr19:8788690..8788697,-#_716c72a2b858bb8f881caf4af94b8d28p17@Slc3a2
2.16e-39FFCP PHASE1:Mm9::chr8:96704054..96704065,-#_9b0fffaa9f1da023d490cbdd38f277dep@chr8:96704054..96704065, -
2.16e-39FFCP PHASE2:Mm9::chr8:96704054..96704065,-#_9b0fffaa9f1da023d490cbdd38f277dep@chr8:96704054..96704065, -
2.2e-39FFCP PHASE1:Mm9::chr1:174150595..174150602,-#_5c2e03966a583077dddfdde04c6fd0f1p@chr1:174150595..174150602, -
2.2e-39FFCP PHASE2:Mm9::chr1:174150595..174150602,-#_5c2e03966a583077dddfdde04c6fd0f1p@chr1:174150595..174150602, -
2.51e-39FFCP PHASE2:Mm9::chr16:15895858..15895888,-#_5cf27c6927524a8d45d9a5d65adf9efep@chr16:15895858..15895888, -
2.51e-39FFCP PHASE2:Mm9::chr1:174128178..174128192,-#_5cf27c6927524a8d45d9a5d65adf9efep@chr1:174128178..174128192, -
2.51e-39FFCP PHASE1:Mm9::chr1:174128178..174128192,-#_5cf27c6927524a8d45d9a5d65adf9efep@chr1:174128178..174128192, -
2.51e-39FFCP PHASE1:Mm9::chr16:15895858..15895888,-#_5cf27c6927524a8d45d9a5d65adf9efep@chr16:15895858..15895888, -
8.08e-39FFCP PHASE2:Mm9::chr1:72895732..72895747,-#_088945259ada760f45c0eb01c6110b67p@chr1:72895732..72895747, -
8.08e-39FFCP PHASE1:Mm9::chr1:72895732..72895747,-#_088945259ada760f45c0eb01c6110b67p@chr1:72895732..72895747, -
4.04e-38FFCP PHASE1:Mm9::chr19:12839908..12839933,-#_d5ee699fc4be5119ded80f63983aee3cp2@Cntf
4.04e-38FFCP PHASE2:Mm9::chr19:12839908..12839933,-#_d5ee699fc4be5119ded80f63983aee3cp2@Cntf
5.94e-38FFCP PHASE1:Mm9::chr1:72898598..72898634,+#_9fe0dc8f8763f42e92cd83a04922a262p@chr1:72898598..72898634, +
5.94e-38FFCP PHASE2:Mm9::chr1:72898598..72898634,+#_9fe0dc8f8763f42e92cd83a04922a262p@chr1:72898598..72898634, +
7.4e-38FFCP PHASE2:Mm9::chr1:72898658..72898669,+#_a74ec40ad87393308ac81195c78eca92p@chr1:72898658..72898669, +
7.4e-38FFCP PHASE1:Mm9::chr1:72898658..72898669,+#_a74ec40ad87393308ac81195c78eca92p@chr1:72898658..72898669, +
1.03e-37FFCP PHASE2:Mm9::chr11:88828250..88828258,-#_8db4ce7b07ecfc8330cf1bdada0124f4p1@ENSMUST00000121228
1.03e-37FFCP PHASE1:Mm9::chr11:88828250..88828258,-#_8db4ce7b07ecfc8330cf1bdada0124f4p1@ENSMUST00000121228
1.14e-37FFCP PHASE1:Hg19::chr4:177302052..177302063,+#_989503b552f40194dc4cc4090e337d52p@chr4:177302052..177302063, +
1.14e-37FFCP PHASE2:Hg19::chr4:177302052..177302063,+#_989503b552f40194dc4cc4090e337d52p@chr4:177302052..177302063, +
9.57e-37FFCP PHASE2:Mm9::chr11:102754448..102754459,-#_60683c4c86a19f9b14bc8897b38bddbdp@chr11:102754448..102754459, -
9.57e-37FFCP PHASE1:Mm9::chr11:102754448..102754459,-#_60683c4c86a19f9b14bc8897b38bddbdp@chr11:102754448..102754459, -
1.13e-36FFCP PHASE1:Mm9::chr1:174128464..174128474,-#_1ae65c4d6931d93d757b1a9671cad65cp@chr1:174128464..174128474, -
1.13e-36FFCP PHASE2:Mm9::chr1:174128464..174128474,-#_1ae65c4d6931d93d757b1a9671cad65cp@chr1:174128464..174128474, -
1.13e-36FFCP PHASE1:Mm9::chr1:72895689..72895698,-#_1ae65c4d6931d93d757b1a9671cad65cp@chr1:72895689..72895698, -
1.13e-36FFCP PHASE2:Mm9::chr14:70592673..70592699,-#_1ae65c4d6931d93d757b1a9671cad65cp@chr14:70592673..70592699, -
1.13e-36FFCP PHASE2:Mm9::chr1:72895689..72895698,-#_1ae65c4d6931d93d757b1a9671cad65cp@chr1:72895689..72895698, -
1.13e-36FFCP PHASE2:Mm9::chr4:153975408..153975411,+#_1ae65c4d6931d93d757b1a9671cad65cp1@ENSMUST00000132106
1.13e-36FFCP PHASE1:Mm9::chr4:153975408..153975411,+#_1ae65c4d6931d93d757b1a9671cad65cp1@ENSMUST00000132106
1.13e-36FFCP PHASE1:Mm9::chr14:70592673..70592699,-#_1ae65c4d6931d93d757b1a9671cad65cp@chr14:70592673..70592699, -
1.59e-36FFCP PHASE2:Mm9::chr1:72898643..72898650,+#_ba8868e8cca32ce475d3d3c56afcc4bcp@chr1:72898643..72898650, +
1.59e-36FFCP PHASE1:Mm9::chr1:72898728..72898736,+#_ba8868e8cca32ce475d3d3c56afcc4bcp@chr1:72898728..72898736, +
1.59e-36FFCP PHASE1:Mm9::chr1:72898643..72898650,+#_ba8868e8cca32ce475d3d3c56afcc4bcp@chr1:72898643..72898650, +
1.59e-36FFCP PHASE2:Mm9::chr1:72898728..72898736,+#_ba8868e8cca32ce475d3d3c56afcc4bcp@chr1:72898728..72898736, +

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