CL:0000149: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000149 | |||
|is_a=CL:0000147 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=visual pigment cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="pigment cell" BROAD [] | ||
|union_of= | |||
|xref= | |||
}} | }} |
Latest revision as of 16:30, 12 September 2014
Name: | visual pigment cell |
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Namespace: | FANTOM |
Synonyms: | "pigment cell" BROAD [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000147(pigment cell) |
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Children
is a: | CL:0002586 (retinal pigment epithelial cell),FF:12739-135I3 (Melanocyte, donor2 (MC+2)) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 12739-135I3 (Melanocyte, donor2 (MC+2))
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
... further results Mouse (Mus musculus)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 12739-135I3 (Melanocyte, donor2 (MC+2))
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000149 (visual pigment cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
6.94e-147 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_27b31ad4bfc71404085a87fd1b6cf4cf | p@chr1:147150847..147150854, - |
6.94e-147 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_27b31ad4bfc71404085a87fd1b6cf4cf | p@chr1:147150847..147150854, - |
8.91e-111 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_6b35b22b7bf78a41bbe1199a73692c7c | p2@SERPINE3 |
8.91e-111 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_6b35b22b7bf78a41bbe1199a73692c7c | p2@SERPINE3 |
1.3e-110 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_4a150ca5b2cd3eddb0efe3a14f732c2f | p@chr13:99135322..99135327, - |
1.3e-110 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_4a150ca5b2cd3eddb0efe3a14f732c2f | p@chr13:99135322..99135327, - |
1.55e-98 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_0f8a4403c537d6003766c59056d084ed | p@chr13:51913893..51913901, + |
1.55e-98 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_0f8a4403c537d6003766c59056d084ed | p@chr13:51913893..51913901, + |
5.72e-89 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_6659a6ea15b7859749a672dc9fcc8b06 | p@chr11:109990513..109990520, - |
5.72e-89 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_6659a6ea15b7859749a672dc9fcc8b06 | p@chr11:109990513..109990520, - |
1.41e-88 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_6831a3a3b16cb2d5a49e187fa6795adb | p@chr5:70308745..70308754, - |
1.41e-88 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_6831a3a3b16cb2d5a49e187fa6795adb | p@chr5:70308745..70308754, - |
2.01e-74 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_599fdb10b1a6ba47e3c09915616f4b0c | p2@C11orf9 |
2.01e-74 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_599fdb10b1a6ba47e3c09915616f4b0c | p2@C11orf9 |
4.26e-74 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_5929dd1320fdbca5deb3b3beaaf08366 | p@chr2:235591306..235591328, + |
4.26e-74 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_5929dd1320fdbca5deb3b3beaaf08366 | p@chr2:235591306..235591328, + |
2.4e-66 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_8ebf6f4f9b9bbc8e271e862337881c9c | p9@C11orf9 |
2.4e-66 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_8ebf6f4f9b9bbc8e271e862337881c9c | p9@C11orf9 |
3.35e-66 | FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_0175e3344a19061022cea51a88799dc5 | p11@CRISPLD1 |
3.35e-66 | FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_0175e3344a19061022cea51a88799dc5 | p11@CRISPLD1 |
4.67e-66 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_23ca983b7460e96bd99aec65a59ab88e | p5@ENST00000437916 |
4.67e-66 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_23ca983b7460e96bd99aec65a59ab88e | p5@ENST00000437916 |
2.61e-64 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_89bc96d50f32790863d350b9c0dc0661 | p1@SERPINE3 |
2.61e-64 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_89bc96d50f32790863d350b9c0dc0661 | p1@SERPINE3 |
5.98e-57 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_669d7967b0dc3ab662667ad190bbf825 | p2@SLC45A2 |
5.98e-57 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_669d7967b0dc3ab662667ad190bbf825 | p2@SLC45A2 |
2.6e-56 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_04e0be8c33dd3593b9ebc618ef8609c4 | p@chr3:69928426..69928436, + |
2.6e-56 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_04e0be8c33dd3593b9ebc618ef8609c4 | p@chr3:69928426..69928436, + |
3.14e-56 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_52389035e63c5fa616136e3217f23d1f | p@chr3:69928404..69928418, + |
3.14e-56 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_52389035e63c5fa616136e3217f23d1f | p@chr3:69928404..69928418, + |
4.58e-56 | FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_8c6415fa626e1119712f1560a392d533 | p@chr6:168250971..168250985, + |
4.58e-56 | FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_8c6415fa626e1119712f1560a392d533 | p@chr22:37633537..37633546, - |
4.58e-56 | FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_8c6415fa626e1119712f1560a392d533 | p@chr6:168250971..168250985, + |
4.58e-56 | FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_8c6415fa626e1119712f1560a392d533 | p@chr22:37633537..37633546, - |
6.68e-56 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_2ea341b6b5eeefd1b4a845a98ad0cb9d | p@chr1:43533230..43533270, + |
6.68e-56 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_2ea341b6b5eeefd1b4a845a98ad0cb9d | p@chr1:43533230..43533270, + |
3.1e-50 | FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_6214d31fbe33aa31f9ebbd9d0ebc7a9b | p@chr13:51913997..51914020, + |
3.1e-50 | FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_6214d31fbe33aa31f9ebbd9d0ebc7a9b | p@chr13:51913997..51914020, + |
3.1e-50 | FFCP PHASE2:Hg19::chrY:14230731..14230736,-#_6214d31fbe33aa31f9ebbd9d0ebc7a9b | p@chrY:14230731..14230736, - |
3.1e-50 | FFCP PHASE1:Hg19::chrY:14230731..14230736,-#_6214d31fbe33aa31f9ebbd9d0ebc7a9b | p@chrY:14230731..14230736, - |
3.69e-50 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_41d2a1759fff0bb17143ce52ef6484f1 | p5@CLIC6 |
3.69e-50 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_41d2a1759fff0bb17143ce52ef6484f1 | p5@CLIC6 |
7.22e-50 | FFCP PHASE2:Hg19::chr15:55562656..55562664,-#_9e8dc11d4980aaae9cd9ba5e2849f82a | p14@RAB27A |
7.22e-50 | FFCP PHASE1:Hg19::chr15:55562656..55562664,-#_9e8dc11d4980aaae9cd9ba5e2849f82a | p14@RAB27A |
8.47e-50 | FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_8f5f58207e6d2c50a4ad7a3b42e32007 | p@chr6:168251000..168251007, + |
8.47e-50 | FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_8f5f58207e6d2c50a4ad7a3b42e32007 | p@chr6:168251000..168251007, + |
9.18e-50 | FFCP PHASE1:Hg19::chr5:33984741..33984774,-#_68e9225a33ee7b77d1c1aca163a44440 | p1@SLC45A2 |
9.18e-50 | FFCP PHASE2:Hg19::chr5:33984741..33984774,-#_68e9225a33ee7b77d1c1aca163a44440 | p1@SLC45A2 |
1.97e-45 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_c100ed806d2ff8cbe31b607f4e79b551 | p@chr13:99135278..99135298, - |
1.97e-45 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_c100ed806d2ff8cbe31b607f4e79b551 | p@chr13:99135278..99135298, - |
1.67e-41 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_1194d4b5fb7b9c0a7029acf6b8e2944c | p@chr3:69928371..69928385, + |
1.67e-41 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_1194d4b5fb7b9c0a7029acf6b8e2944c | p@chr3:69928371..69928385, + |
2.2e-41 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_9565173161b35911519df00479820d7f | p@chr14:87636652..87636657, - |
2.2e-41 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_9565173161b35911519df00479820d7f | p@chr14:87636652..87636657, - |
1.81e-40 | FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_8ad5a192bff3020cbca7d27f235b31d7 | p@chr2:235591286..235591298, + |
1.81e-40 | FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_8ad5a192bff3020cbca7d27f235b31d7 | p@chr2:235591286..235591298, + |
2.71e-40 | FFCP PHASE2:Hg19::chr12:56347889..56347893,+#_eac1fc690abb58f68d2bc8f3fa863ce0 | p@chr12:56347889..56347893, + |
2.71e-40 | FFCP PHASE1:Hg19::chr12:56347889..56347893,+#_eac1fc690abb58f68d2bc8f3fa863ce0 | p@chr12:56347889..56347893, + |
3.55e-40 | FFCP PHASE2:Hg19::chr11:88911074..88911102,+#_f1c4fe8e86fdc645adac29a0fc97927c | p2@TYR |
3.55e-40 | FFCP PHASE1:Hg19::chr11:88911074..88911102,+#_f1c4fe8e86fdc645adac29a0fc97927c | p2@TYR |
4.94e-40 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_94e9602d46debdb44e7838e7376518bf | p5@MFRP, p6@C1QTNF5 |
4.94e-40 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_94e9602d46debdb44e7838e7376518bf | p@chr16:84228961..84228982, + |
4.94e-40 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_94e9602d46debdb44e7838e7376518bf | p@chr16:84228961..84228982, + |
4.94e-40 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_94e9602d46debdb44e7838e7376518bf | p5@MFRP, p6@C1QTNF5 |
7.95e-40 | FFCP PHASE1:Hg19::chr15:48413211..48413239,+#_2993b0ff60499723705e12cd5e0ff9c0 | p2@SLC24A5 |
7.95e-40 | FFCP PHASE2:Hg19::chr15:48413211..48413239,+#_2993b0ff60499723705e12cd5e0ff9c0 | p2@SLC24A5 |
2.78e-38 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_c866eb7192ce0fedbd733bea3945abb5 | p3@CLIC6 |
2.78e-38 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_c866eb7192ce0fedbd733bea3945abb5 | p3@CLIC6 |
4.61e-38 | FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_879c6de1903a71ff4fb45386a5d13963 | p7@GDPD5 |
4.61e-38 | FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_879c6de1903a71ff4fb45386a5d13963 | p7@GDPD5 |
1.26e-37 | FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_97bc16d6d565d9d0327362baf6933616 | p4@MFRP, p5@C1QTNF5 |
1.26e-37 | FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_97bc16d6d565d9d0327362baf6933616 | p4@MFRP, p5@C1QTNF5 |
1.43e-37 | FFCP PHASE1:Hg19::chr12:56351196..56351222,-#_e4965cb07789a5524d2feb30ae1658b4 | p7@PMEL |
1.43e-37 | FFCP PHASE2:Hg19::chr12:56351196..56351222,-#_e4965cb07789a5524d2feb30ae1658b4 | p7@PMEL |
9.55e-37 | FFCP PHASE2:Hg19::chr11:88911033..88911049,+#_ba4453dba31333bc985f3239b366b642 | p1@TYR |
9.55e-37 | FFCP PHASE1:Hg19::chr11:88911033..88911049,+#_ba4453dba31333bc985f3239b366b642 | p1@TYR |
8.49e-35 | FFCP PHASE2:Hg19::chr15:55563100..55563135,-#_d03c58eedc40a41e55bfb7774857bd72 | p4@RAB27A |
8.49e-35 | FFCP PHASE1:Hg19::chr15:55563100..55563135,-#_d03c58eedc40a41e55bfb7774857bd72 | p4@RAB27A |
8.49e-35 | FFCP PHASE2:Hg19::chr15:55562582..55562617,-#_d03c58eedc40a41e55bfb7774857bd72 | p3@RAB27A |
8.49e-35 | FFCP PHASE1:Hg19::chr15:55562582..55562617,-#_d03c58eedc40a41e55bfb7774857bd72 | p3@RAB27A |
5.06e-34 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_dce7fe3928175e8446521505801338c7 | p@chr17:932596..932605, - |
5.06e-34 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_dce7fe3928175e8446521505801338c7 | p@chr17:932596..932605, - |
8.36e-34 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_3cccdcb96eb24d77af7ce508d58c5eb3 | p1@SLC16A8 |
8.36e-34 | FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_3cccdcb96eb24d77af7ce508d58c5eb3 | p5@CYP24A1 |
8.36e-34 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_3cccdcb96eb24d77af7ce508d58c5eb3 | p1@SLC16A8 |
8.36e-34 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_3cccdcb96eb24d77af7ce508d58c5eb3 | p@chr17:932340..932343, - |
8.36e-34 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_3cccdcb96eb24d77af7ce508d58c5eb3 | p@chr17:932340..932343, - |
8.36e-34 | FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_3cccdcb96eb24d77af7ce508d58c5eb3 | p5@CYP24A1 |
1.38e-33 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d7d77e86898ea63c77e6db8e28972f76 | p@chr3:98672197..98672201, + |
1.38e-33 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d7d77e86898ea63c77e6db8e28972f76 | p@chr3:98672197..98672201, + |
1.63e-33 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_ba15d014d2531b801ce2ee58e5298870 | p@chr3:183733654..183733680, - |
1.63e-33 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_ba15d014d2531b801ce2ee58e5298870 | p1@ENST00000437461 |
1.63e-33 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_ba15d014d2531b801ce2ee58e5298870 | p@chr3:183733654..183733680, - |
1.63e-33 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_ba15d014d2531b801ce2ee58e5298870 | p1@ENST00000437461 |
2.89e-33 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_c4a7e3a89afe20fb298db99ff68a52b0 | p@chr9:140088882..140088898, - |
2.89e-33 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_c4a7e3a89afe20fb298db99ff68a52b0 | p@chr9:140088882..140088898, - |
6.19e-33 | FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_f4d02250e757f16563ffe34ab1d8fd42 | p1@LOC100505967 |
6.19e-33 | FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_f4d02250e757f16563ffe34ab1d8fd42 | p1@LOC100505967 |
1.18e-32 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_ca05b734b4c8f56bbc39a35cb3debd8c | p11@SIX3 |
1.18e-32 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_ca05b734b4c8f56bbc39a35cb3debd8c | p11@SIX3 |