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{{CL
{{CL
|id=CL:0000153
|alt_id=
|name=GAG secreting cell
|namespace=cell
|def="A cell that secretes glycosaminoglycans." [GOC:tfm]
|xref=
|is_a=CL:0000327;;CL:0000447
|synonym="hyaluronic acid secreting cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell that secretes glycosaminoglycans." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000153
|is_a=CL:0000327 ;;CL:0000447
|is_obsolete=
|located_in=
|located_in=
|name=GAG secreting cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="hyaluronic acid secreting cell" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:30, 12 September 2014

Name:GAG secreting cell
Namespace:FANTOM
Definition:"A cell that secretes glycosaminoglycans." [GOC:tfm]
Synonyms: "hyaluronic acid secreting cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000327(extracellular matrix secreting cell),CL:0000447(carbohydrate secreting cell)



Children


is a:CL:0000138 (chondrocyte),CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000153 (GAG secreting cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.38e-98FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_7ca0a6512b2b3ff1fd17bb20015c227ap6@ACAN
2.38e-98FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_7ca0a6512b2b3ff1fd17bb20015c227ap6@ACAN
8.49e-88FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_260ae13d1df9b236690ed84a48adb8efp8@ACAN
8.49e-88FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_260ae13d1df9b236690ed84a48adb8efp8@ACAN
2.08e-87FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_86362eefe50320f3fddacc17fc89d199p@chr1:186273262..186273282, +
2.08e-87FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_86362eefe50320f3fddacc17fc89d199p9@ERG
2.08e-87FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_86362eefe50320f3fddacc17fc89d199p@chr1:186273262..186273282, +
2.08e-87FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_86362eefe50320f3fddacc17fc89d199p9@ERG
2.71e-77FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_487e254099c856438515fc4039100c21p@chr15:89417758..89417770, +
2.71e-77FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_487e254099c856438515fc4039100c21p@chr15:89417758..89417770, +
2.16e-70FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_8288fd0bb021934cd561964f763663dfp@chr7:150824026..150824027, -
2.16e-70FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_8288fd0bb021934cd561964f763663dfp@chr7:150824026..150824027, -
6.39e-64FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_be8c1d6b37ea2a64e12f48993342c1edp@chr15:89381951..89381962, +
6.39e-64FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_be8c1d6b37ea2a64e12f48993342c1edp@chr15:89381951..89381962, +
2.57e-63FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_37063fcf7763ea3e3056715bb325df05p@chr12:57629234..57629249, -
2.57e-63FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_37063fcf7763ea3e3056715bb325df05p@chr12:57629234..57629249, -
4.9e-63FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_c831c21278d2dff4cfffdba6d5b70631p19@CHI3L1
4.9e-63FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_c831c21278d2dff4cfffdba6d5b70631p19@CHI3L1
6.52e-61FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_740611a8b5065b2bf89d753f835eee24p@chr1:186277359..186277362, +
6.52e-61FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_740611a8b5065b2bf89d753f835eee24p@chr1:186277359..186277362, +
8.36e-61FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_2ab29671bc386ea395ec14e5a4df5aa7p@chr1:186276427..186276448, +
8.36e-61FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_2ab29671bc386ea395ec14e5a4df5aa7p@chr1:186276427..186276448, +
7.45e-59FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_788ef1a83eed94e821d76092f0ddff98p@chr1:186277186..186277192, +
7.45e-59FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_788ef1a83eed94e821d76092f0ddff98p@chr1:186277186..186277192, +
7.54e-59FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_5dabcaada171f76b09f5af9d32e77085p20@CHI3L1
7.54e-59FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_5dabcaada171f76b09f5af9d32e77085p20@CHI3L1
8.64e-57FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_10e043a2e690db8121500adbf5171e69p@chr12:57629315..57629334, -
8.64e-57FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_10e043a2e690db8121500adbf5171e69p@chr12:57629315..57629334, -
8.77e-57FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_00c20a43853205e6a2dc02be6654946ep14@CHI3L1
8.77e-57FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_00c20a43853205e6a2dc02be6654946ep14@CHI3L1
1.58e-53FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_fe119b635f3cb4180c83c41801d231fap@chr1:203152908..203152924, -
1.58e-53FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_fe119b635f3cb4180c83c41801d231fap@chr1:203152908..203152924, -
7.64e-51FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_c238626f5c00ca908124d34e26450398p16@CHI3L1
7.64e-51FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_c238626f5c00ca908124d34e26450398p16@CHI3L1
1.02e-50FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_cafae3fbc5cad5875d2bbb0057edd73fp10@ACAN
1.02e-50FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_cafae3fbc5cad5875d2bbb0057edd73fp10@ACAN
1.49e-50FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_8bca39339c0ff323b9c79bd6f69a1d17p@chr7:45956964..45956971, +
1.49e-50FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_8bca39339c0ff323b9c79bd6f69a1d17p@chr7:45956964..45956971, +
2.49e-50FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_1ffef7a885e4810d8d664ccae9e868d4p@chr8:57359975..57359992, -
2.49e-50FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_1ffef7a885e4810d8d664ccae9e868d4p@chr8:57359975..57359992, -
2.77e-50FFCP PHASE1:Hg19::chr1:186276386..186276397,+#_6f914066321aee59a0d4d4379e6e2b1fp@chr1:186276386..186276397, +
2.77e-50FFCP PHASE2:Hg19::chr1:186276386..186276397,+#_6f914066321aee59a0d4d4379e6e2b1fp@chr1:186276386..186276397, +
2.83e-50FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_b1ef49a90701b1c3456efcab285c31ebp@chr8:57353982..57353991, -
2.83e-50FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_b1ef49a90701b1c3456efcab285c31ebp@chr8:57353982..57353991, -
6.62e-50FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_55992d421fbb766d9a9378efefdc9efcp@chr18:22150956..22150983, +
6.62e-50FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_55992d421fbb766d9a9378efefdc9efcp@chr18:22150956..22150983, +
7.82e-50FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_1888c5a9d60652ba11abd91bb7deabcep@chr16:66906996..66906997, -
7.82e-50FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_1888c5a9d60652ba11abd91bb7deabcep@chr16:66906996..66906997, -
9.25e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_73b8d94161e8f2d71bf62077f1dea6e3p@chr8:57354278..57354286, +
9.25e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_73b8d94161e8f2d71bf62077f1dea6e3p@chr8:57354278..57354286, +
1.07e-49FFCP PHASE2:Hg19::chr7:45954480..45954494,+#_0f675f6f315bbc0b9ba96e0478cf72b2p@chr7:45954480..45954494, +
1.07e-49FFCP PHASE1:Hg19::chr7:45954480..45954494,+#_0f675f6f315bbc0b9ba96e0478cf72b2p@chr7:45954480..45954494, +
4.1e-49FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_5b531df3df55b4bf2e0a9886403e8f35p13@CHI3L1
4.1e-49FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_5b531df3df55b4bf2e0a9886403e8f35p13@CHI3L1
5.08e-49FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_d876f8d86b9ce4b0ed11c2e8524711c2p6@ERG
5.08e-49FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_d876f8d86b9ce4b0ed11c2e8524711c2p6@ERG
6.99e-47FFCP PHASE2:Hg19::chr1:203150369..203150408,-#_75029031a34b81934d9f61126b781960p@chr1:203150369..203150408, -
6.99e-47FFCP PHASE1:Hg19::chr1:203150369..203150408,-#_75029031a34b81934d9f61126b781960p@chr1:203150369..203150408, -
8.02e-47FFCP PHASE1:Hg19::chr1:186276857..186276868,+#_f34d066305dd068e03fdbdaeef151fb9p@chr1:186276857..186276868, +
8.02e-47FFCP PHASE2:Hg19::chr1:186276857..186276868,+#_f34d066305dd068e03fdbdaeef151fb9p@chr1:186276857..186276868, +
8.58e-47FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_8ffcc352d6658f2df3639f232a4d1eddp7@CHI3L1
8.58e-47FFCP PHASE2:Hg19::chr1:203148428..203148437,-#_8ffcc352d6658f2df3639f232a4d1eddp11@CHI3L1
8.58e-47FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_8ffcc352d6658f2df3639f232a4d1eddp7@CHI3L1
8.58e-47FFCP PHASE1:Hg19::chr1:203148428..203148437,-#_8ffcc352d6658f2df3639f232a4d1eddp11@CHI3L1
1.39e-46FFCP PHASE1:Hg19::chr7:45952836..45952875,+#_d7f4fb2dd81db2376dadf596cca901f0p@chr7:45952836..45952875, +
1.39e-46FFCP PHASE2:Hg19::chr7:45952836..45952875,+#_d7f4fb2dd81db2376dadf596cca901f0p@chr7:45952836..45952875, +
1.9e-46FFCP PHASE1:Hg19::chr1:203148907..203148922,+#_cd4c80b0182b06a807791224f5145826p@chr1:203148907..203148922, +
1.9e-46FFCP PHASE2:Hg19::chr1:203148907..203148922,+#_cd4c80b0182b06a807791224f5145826p@chr1:203148907..203148922, +
2.06e-46FFCP PHASE1:Hg19::chr1:203148057..203148072,+#_2d8165b40c8b64610d5ab5b5a939eacfp@chr1:203148057..203148072, +
2.06e-46FFCP PHASE2:Hg19::chr1:203148057..203148072,+#_2d8165b40c8b64610d5ab5b5a939eacfp@chr1:203148057..203148072, +
2.24e-45FFCP PHASE2:Hg19::chr1:203154342..203154363,-#_bce12a11399a6679d15fc0a2c6c8d527p9@CHI3L1
2.24e-45FFCP PHASE1:Hg19::chr1:203154342..203154363,-#_bce12a11399a6679d15fc0a2c6c8d527p9@CHI3L1
9.75e-45FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_2b6a3dba30858fa535d33a3570f2b2ccp@chr1:172145683..172145699, +
9.75e-45FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_2b6a3dba30858fa535d33a3570f2b2ccp@chr8:37535618..37535621, +
9.75e-45FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_2b6a3dba30858fa535d33a3570f2b2ccp@chr12:57628728..57628739, -
9.75e-45FFCP PHASE2:Hg19::chr21:40033882..40033887,-#_2b6a3dba30858fa535d33a3570f2b2ccp21@ERG
9.75e-45FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_2b6a3dba30858fa535d33a3570f2b2ccp@chr12:57628728..57628739, -
9.75e-45FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_2b6a3dba30858fa535d33a3570f2b2ccp@chr1:172145683..172145699, +
9.75e-45FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_2b6a3dba30858fa535d33a3570f2b2ccp@chr8:37535618..37535621, +
9.75e-45FFCP PHASE1:Hg19::chr21:40033882..40033887,-#_2b6a3dba30858fa535d33a3570f2b2ccp21@ERG
1.31e-44FFCP PHASE1:Hg19::chr1:203148612..203148623,-#_e8e0bfec24b3187c79bb9cc0733d21ecp12@CHI3L1
1.31e-44FFCP PHASE2:Hg19::chr1:203148612..203148623,-#_e8e0bfec24b3187c79bb9cc0733d21ecp12@CHI3L1
1.82e-44FFCP PHASE1:Hg19::chr1:186276499..186276506,+#_2207cd7cd56a96361ac67209549f894ap@chr1:186276499..186276506, +
1.82e-44FFCP PHASE2:Hg19::chr1:186276499..186276506,+#_2207cd7cd56a96361ac67209549f894ap@chr1:186276499..186276506, +
1.27e-42FFCP PHASE2:Hg19::chr1:186275953..186275985,-#_82d233d475e8bffa7f8dd65f032cda20p@chr1:186275953..186275985, -
1.27e-42FFCP PHASE1:Hg19::chr1:186275953..186275985,-#_82d233d475e8bffa7f8dd65f032cda20p@chr1:186275953..186275985, -
1.65e-42FFCP PHASE2:Hg19::chr2:38466712..38466722,-#_c6e037adfc8d9b632ceea15dc0270bcdp4@ENST00000450854
1.65e-42FFCP PHASE1:Hg19::chr2:38466712..38466722,-#_c6e037adfc8d9b632ceea15dc0270bcdp4@ENST00000450854
3.11e-42FFCP PHASE1:Hg19::chr1:186277391..186277396,+#_8c1794d59e970a4c1d0a51f52588e75cp@chr1:186277391..186277396, +
3.11e-42FFCP PHASE2:Hg19::chr1:186277391..186277396,+#_8c1794d59e970a4c1d0a51f52588e75cp@chr1:186277391..186277396, +
3.67e-42FFCP PHASE2:Hg19::chr21:40032558..40032578,-#_2d847efd6ad0b5094ff79f65e34abbebp5@ERG
3.67e-42FFCP PHASE1:Hg19::chr21:40032558..40032578,-#_2d847efd6ad0b5094ff79f65e34abbebp5@ERG
5.01e-42FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_265552aa83199f02501ce26b9cce578bp21@CHI3L1
5.01e-42FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_265552aa83199f02501ce26b9cce578bp21@CHI3L1
5.48e-42FFCP PHASE1:Hg19::chr1:186275628..186275643,+#_b8d5839f69b45634edc929a4e3afd923p@chr1:186275628..186275643, +
5.48e-42FFCP PHASE2:Hg19::chr1:186275628..186275643,+#_b8d5839f69b45634edc929a4e3afd923p@chr1:186275628..186275643, +
1.31e-41FFCP PHASE1:Hg19::chr11:73003801..73003812,+#_5f0f31b1eaff5e1d2935421da9c427cap5@P2RY6
1.31e-41FFCP PHASE2:Hg19::chr11:73003801..73003812,+#_5f0f31b1eaff5e1d2935421da9c427cap5@P2RY6
1.47e-41FFCP PHASE2:Hg19::chr1:203151897..203151908,-#_b57df046f6d1f7dd0bdc55c97e0fc50bp15@CHI3L1
1.47e-41FFCP PHASE1:Hg19::chr1:203151897..203151908,-#_b57df046f6d1f7dd0bdc55c97e0fc50bp15@CHI3L1

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