CL:0000188: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=skeletal muscle | |name=cell of skeletal muscle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001134 | |part_of=UBERON:0001134 | ||
Latest revision as of 16:31, 12 September 2014
| Name: | cell of skeletal muscle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A somatic cell located in skeletal muscle." [GOC:tfm] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0001134(skeletal muscle tissue) |
Children
| is a: | CL:0000355 (multi-potent skeletal muscle stem cell),CL:0000594 (skeletal muscle satellite cell) |
|---|---|
| derives from: | FF:0000162 (human skeletal muscle cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
- 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
- 11358-117H8 (Skeletal Muscle Cells, donor2)
- 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
- 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
- 11430-118G8 (Skeletal Muscle Cells, donor3)
- 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
- 11451-119A2 (Skeletal Muscle Cells, donor4)
... further results Mouse (Mus musculus)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
- 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
- 11358-117H8 (Skeletal Muscle Cells, donor2)
- 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
- 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
- 11430-118G8 (Skeletal Muscle Cells, donor3)
- 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
- 11451-119A2 (Skeletal Muscle Cells, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000188 (cell of skeletal muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.88e-112 | FFCP PHASE2:Hg19::chr11:85090268..85090294,-#_ed3eafdbb00a753c922e48bdbd8e7943 | p@chr11:85090268..85090294, - |
| 7.88e-112 | FFCP PHASE1:Hg19::chr11:85090268..85090294,-#_ed3eafdbb00a753c922e48bdbd8e7943 | p@chr11:85090268..85090294, - |
| 9.06e-79 | FFCP PHASE1:Hg19::chr7:81337867..81337871,+#_68aee55847fc2b7b1004b27cb1a5b4e9 | p@chr7:81337867..81337871, + |
| 9.06e-79 | FFCP PHASE2:Hg19::chr7:81337867..81337871,+#_68aee55847fc2b7b1004b27cb1a5b4e9 | p@chr7:81337867..81337871, + |
| 6.54e-72 | FFCP PHASE1:Hg19::chr2:208104461..208104478,+#_16009efcac4d236ba4b6c8901d6275a4 | p3@ENST00000430494 |
| 6.54e-72 | FFCP PHASE2:Hg19::chr2:208104461..208104478,+#_16009efcac4d236ba4b6c8901d6275a4 | p3@ENST00000430494 |
| 2.3e-68 | FFCP PHASE1:Hg19::chr6:169588532..169588548,-#_ddad573b76550b7b8407bd05dc1a1dc5 | p@chr6:169588532..169588548, - |
| 2.3e-68 | FFCP PHASE2:Hg19::chr6:169588532..169588548,-#_ddad573b76550b7b8407bd05dc1a1dc5 | p@chr6:169588532..169588548, - |
| 8.22e-67 | FFCP PHASE1:Hg19::chr2:233404395..233404408,+#_003ee43a351e0171723cff2032bec07d | p2@CHRNG |
| 8.22e-67 | FFCP PHASE2:Hg19::chr2:233404395..233404408,+#_003ee43a351e0171723cff2032bec07d | p2@CHRNG |
| 9.36e-60 | FFCP PHASE1:Hg19::chr5:53776469..53776484,+#_5b5f8c6afc351e80250653029dd91665 | p@chr5:53776469..53776484, + |
| 9.36e-60 | FFCP PHASE2:Hg19::chr5:53776469..53776484,+#_5b5f8c6afc351e80250653029dd91665 | p@chr5:53776469..53776484, + |
| 1.0e-58 | FFCP PHASE2:Hg19::chr9:23769271..23769295,-#_950a973f8ae29905c4d696100102b297 | p@chr9:23769271..23769295, - |
| 1.0e-58 | FFCP PHASE1:Hg19::chr9:23769271..23769295,-#_950a973f8ae29905c4d696100102b297 | p@chr9:23769271..23769295, - |
| 1.17e-58 | FFCP PHASE1:Hg19::chr16:70732811..70732824,-#_ac066e25ed3330fe9b699f80f957da5f | p@chr16:70732811..70732824, - |
| 1.17e-58 | FFCP PHASE2:Hg19::chr16:70732811..70732824,-#_ac066e25ed3330fe9b699f80f957da5f | p@chr16:70732811..70732824, - |
| 5.23e-58 | FFCP PHASE1:Hg19::chr16:89238212..89238224,+#_8f13a5239fd7b8968cb0e35938c01b79 | p2@CDH15 |
| 5.23e-58 | FFCP PHASE2:Hg19::chr16:89238212..89238224,+#_8f13a5239fd7b8968cb0e35938c01b79 | p2@CDH15 |
| 6.02e-55 | FFCP PHASE1:Hg19::chr8:144874971..144874988,-#_d390e5c0ed2ff9b0ebcfcdc7f65c9acb | p@chr8:144874971..144874988, - |
| 6.02e-55 | FFCP PHASE2:Hg19::chr8:144874971..144874988,-#_d390e5c0ed2ff9b0ebcfcdc7f65c9acb | p@chr8:144874971..144874988, - |
| 1.18e-51 | FFCP PHASE1:Hg19::chr9:136390071..136390087,-#_b62cecf948382ac4e07fdfae40522dd7 | p1@TMEM8C |
| 1.18e-51 | FFCP PHASE2:Hg19::chr9:136390071..136390087,-#_b62cecf948382ac4e07fdfae40522dd7 | p1@TMEM8C |
| 2.83e-50 | FFCP PHASE1:Hg19::chr8:144875208..144875222,-#_0e6f2d71db548dc42268856385f26700 | p@chr8:144875208..144875222, - |
| 2.83e-50 | FFCP PHASE2:Hg19::chr8:144875208..144875222,-#_0e6f2d71db548dc42268856385f26700 | p@chr8:144875208..144875222, - |
| 9.35e-50 | FFCP PHASE1:Hg19::chr13:94958055..94958072,+#_36a51141737638c05e297a73051f687e | p@chr13:94958055..94958072, + |
| 9.35e-50 | FFCP PHASE2:Hg19::chr13:94958055..94958072,+#_36a51141737638c05e297a73051f687e | p@chr13:94958055..94958072, + |
| 9.86e-50 | FFCP PHASE1:Hg19::chr2:145161707..145161728,-#_0b391dad19421c8961f71edf3426a748 | p@chr2:145161707..145161728, - |
| 9.86e-50 | FFCP PHASE2:Hg19::chr2:145161707..145161728,-#_0b391dad19421c8961f71edf3426a748 | p@chr2:145161707..145161728, - |
| 1.03e-49 | FFCP PHASE1:Hg19::chr13:94958004..94958025,+#_a0c2530ca3b087d8fbcfeaadfb56b1da | p@chr13:94958004..94958025, + |
| 1.03e-49 | FFCP PHASE2:Hg19::chr13:94958004..94958025,+#_a0c2530ca3b087d8fbcfeaadfb56b1da | p@chr13:94958004..94958025, + |
| 3.29e-47 | FFCP PHASE2:Hg19::chr11:17741111..17741124,+#_8f4e66ebb80830865e83f6948dc814f6 | p1@MYOD1 |
| 3.29e-47 | FFCP PHASE1:Hg19::chr11:17741111..17741124,+#_8f4e66ebb80830865e83f6948dc814f6 | p1@MYOD1 |
| 1.14e-45 | FFCP PHASE2:Hg19::chr2:208104497..208104512,+#_54a8577da53262d88453874939daa281 | p2@ENST00000430494 |
| 1.14e-45 | FFCP PHASE1:Hg19::chr2:208104497..208104512,+#_54a8577da53262d88453874939daa281 | p2@ENST00000430494 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr9:14520447..14520460,-#_05554db615eceaf002127053ce8f3a2b | p@chr9:14520447..14520460, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chrX:135827794..135827802,-#_05554db615eceaf002127053ce8f3a2b | p@chrX:135827794..135827802, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr6:2783611..2783617,+#_05554db615eceaf002127053ce8f3a2b | p5@U56249 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr11:85090324..85090329,-#_05554db615eceaf002127053ce8f3a2b | p@chr11:85090324..85090329, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr8:87774996..87775001,+#_05554db615eceaf002127053ce8f3a2b | p@chr8:87774996..87775001, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr11:17716498..17716504,+#_05554db615eceaf002127053ce8f3a2b | p2@ENST00000524885 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr8:87774996..87775001,+#_05554db615eceaf002127053ce8f3a2b | p@chr8:87774996..87775001, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr6:2783707..2783715,+#_05554db615eceaf002127053ce8f3a2b | p2@U56249 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr6:2783707..2783715,+#_05554db615eceaf002127053ce8f3a2b | p2@U56249 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr13:106582200..106582203,+#_05554db615eceaf002127053ce8f3a2b | p@chr13:106582200..106582203, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr9:14520447..14520460,-#_05554db615eceaf002127053ce8f3a2b | p@chr9:14520447..14520460, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chrX:135827794..135827802,-#_05554db615eceaf002127053ce8f3a2b | p@chrX:135827794..135827802, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr11:17716498..17716504,+#_05554db615eceaf002127053ce8f3a2b | p2@ENST00000524885 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr13:106582200..106582203,+#_05554db615eceaf002127053ce8f3a2b | p@chr13:106582200..106582203, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr6:2783611..2783617,+#_05554db615eceaf002127053ce8f3a2b | p5@U56249 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr11:85090324..85090329,-#_05554db615eceaf002127053ce8f3a2b | p@chr11:85090324..85090329, - |
| 2.84e-44 | FFCP PHASE1:Hg19::chr6:169588553..169588570,-#_f918afe45b073b55951c0e71ef5e6662 | p@chr6:169588553..169588570, - |
| 2.84e-44 | FFCP PHASE2:Hg19::chr6:169588553..169588570,-#_f918afe45b073b55951c0e71ef5e6662 | p@chr6:169588553..169588570, - |
| 3.55e-44 | FFCP PHASE1:Hg19::chr22:20103644..20103662,+#_4024dc1d03862784c8b53faef5907fb7 | p10@RANBP1 |
| 3.55e-44 | FFCP PHASE2:Hg19::chr22:20103644..20103662,+#_4024dc1d03862784c8b53faef5907fb7 | p10@RANBP1 |
| 4.57e-44 | FFCP PHASE2:Hg19::chr6:52001069..52001073,+#_e564fb63382632d165d5e3c9358b6cf6 | p@chr6:52001069..52001073, + |
| 4.57e-44 | FFCP PHASE1:Hg19::chr6:52001069..52001073,+#_e564fb63382632d165d5e3c9358b6cf6 | p@chr6:52001069..52001073, + |
| 1.7e-43 | FFCP PHASE1:Hg19::chr11:47470591..47470604,-#_3123da5e5023a7ae6c6864580f0ce6e5 | p4@RAPSN |
| 1.7e-43 | FFCP PHASE2:Hg19::chr11:47470591..47470604,-#_3123da5e5023a7ae6c6864580f0ce6e5 | p4@RAPSN |
| 1.79e-42 | FFCP PHASE1:Hg19::chr2:208175027..208175053,-#_68d8cfed49844ce59cabaa465321c26e | p@chr2:208175027..208175053, - |
| 1.79e-42 | FFCP PHASE2:Hg19::chr2:208175027..208175053,-#_68d8cfed49844ce59cabaa465321c26e | p@chr2:208175027..208175053, - |
| 3.01e-42 | FFCP PHASE2:Hg19::chr16:89238188..89238199,+#_46ddbe8bc5c05f52babf7a0e3075fdea | p3@CDH15 |
| 3.01e-42 | FFCP PHASE1:Hg19::chr16:89238188..89238199,+#_46ddbe8bc5c05f52babf7a0e3075fdea | p3@CDH15 |
| 1.19e-41 | FFCP PHASE2:Hg19::chr11:47470657..47470674,-#_3767892ab2ebc35cd197da33ea3d2049 | p2@RAPSN |
| 1.19e-41 | FFCP PHASE1:Hg19::chr11:47470657..47470674,-#_3767892ab2ebc35cd197da33ea3d2049 | p2@RAPSN |
| 1.31e-39 | FFCP PHASE1:Hg19::chr11:17741254..17741282,+#_abdad26377d27a83572a82605d25d088 | p2@MYOD1 |
| 1.31e-39 | FFCP PHASE2:Hg19::chr11:17741254..17741282,+#_abdad26377d27a83572a82605d25d088 | p2@MYOD1 |
| 1.57e-39 | FFCP PHASE2:Hg19::chr11:17741084..17741094,+#_66f5a2100eab5e2967c6faa5a8c55dbd | p3@MYOD1 |
| 1.57e-39 | FFCP PHASE1:Hg19::chr11:17741084..17741094,+#_66f5a2100eab5e2967c6faa5a8c55dbd | p3@MYOD1 |
| 1.8e-39 | FFCP PHASE1:Hg19::chr9:38414520..38414541,-#_b0df3466f4d50e61159531265e55e6c6 | p@chr9:38414520..38414541, - |
| 1.8e-39 | FFCP PHASE2:Hg19::chr9:38414520..38414541,-#_b0df3466f4d50e61159531265e55e6c6 | p@chr9:38414520..38414541, - |
| 2.42e-39 | FFCP PHASE1:Hg19::chr1:203052309..203052311,-#_fa5f14c45d4df404aa06d877eaf5291f | p@chr1:203052309..203052311, - |
| 2.42e-39 | FFCP PHASE2:Hg19::chr1:203052309..203052311,-#_fa5f14c45d4df404aa06d877eaf5291f | p@chr1:203052309..203052311, - |
| 2.64e-38 | FFCP PHASE1:Hg19::chr2:233404429..233404447,+#_a97f4bbf3b0b6e034f1d1cce3d690e24 | p1@CHRNG |
| 2.64e-38 | FFCP PHASE2:Hg19::chr2:233404429..233404447,+#_a97f4bbf3b0b6e034f1d1cce3d690e24 | p1@CHRNG |
| 6.67e-38 | FFCP PHASE1:Hg19::chr16:31225432..31225453,+#_54c37c5b57f025541991817d8a475509 | p2@TRIM72 |
| 6.67e-38 | FFCP PHASE2:Hg19::chr16:31225432..31225453,+#_54c37c5b57f025541991817d8a475509 | p2@TRIM72 |
| 4.17e-35 | FFCP PHASE1:Hg19::chr16:31225461..31225498,+#_44ca4222d79ec8e5f7b042264a9c0d80 | p1@TRIM72 |
| 4.17e-35 | FFCP PHASE2:Hg19::chr16:31225461..31225498,+#_44ca4222d79ec8e5f7b042264a9c0d80 | p1@TRIM72 |
| 4.98e-34 | FFCP PHASE1:Hg19::chr17:10560619..10560631,-#_6e8dba20ec332b7fb427468feb221795 | p1@MYH3 |
| 4.98e-34 | FFCP PHASE2:Hg19::chr17:10560619..10560631,-#_6e8dba20ec332b7fb427468feb221795 | p1@MYH3 |
| 2.61e-33 | FFCP PHASE1:Hg19::chr9:16871214..16871260,-#_14c61c8bc356cc6396603833be5733ee | p11@BNC2 |
| 2.61e-33 | FFCP PHASE2:Hg19::chr9:16871214..16871260,-#_14c61c8bc356cc6396603833be5733ee | p11@BNC2 |
| 1.21e-32 | FFCP PHASE2:Hg19::chr17:65040678..65040733,+#_7ddb3feecdfd04938f19ba89f6e2c767 | p1@CACNG1 |
| 1.21e-32 | FFCP PHASE1:Hg19::chr17:65040678..65040733,+#_7ddb3feecdfd04938f19ba89f6e2c767 | p1@CACNG1 |
| 1.66e-32 | FFCP PHASE2:Hg19::chr11:47470682..47470693,-#_2d297363b6c93f422ccc24cf6dfa00b8 | p1@RAPSN |
| 1.66e-32 | FFCP PHASE1:Hg19::chr11:47470682..47470693,-#_2d297363b6c93f422ccc24cf6dfa00b8 | p1@RAPSN |
| 2.7e-32 | FFCP PHASE1:Hg19::chr2:233390904..233390920,+#_6db89f5e5fa81562469a085f1386d84c | p2@CHRND |
| 2.7e-32 | FFCP PHASE2:Hg19::chr2:233390904..233390920,+#_6db89f5e5fa81562469a085f1386d84c | p2@CHRND |
| 2.66e-30 | FFCP PHASE1:Hg19::chr1:205210718..205210738,+#_e2f38a3b34c39fd67861e8c48c2ed180 | p@chr1:205210718..205210738, + |
| 2.66e-30 | FFCP PHASE2:Hg19::chr1:205210718..205210738,+#_e2f38a3b34c39fd67861e8c48c2ed180 | p@chr1:205210718..205210738, + |
| 3.09e-30 | FFCP PHASE1:Hg19::chr8:144799392..144799409,+#_6415f62d2c940a301dceb00cd4fef881 | p@chr8:144799392..144799409, + |
| 3.09e-30 | FFCP PHASE2:Hg19::chr8:144799392..144799409,+#_6415f62d2c940a301dceb00cd4fef881 | p@chr8:144799392..144799409, + |
| 3.09e-30 | FFCP PHASE2:Hg19::chr11:44884533..44884555,+#_6415f62d2c940a301dceb00cd4fef881 | p@chr11:44884533..44884555, + |
| 3.09e-30 | FFCP PHASE1:Hg19::chr11:44884533..44884555,+#_6415f62d2c940a301dceb00cd4fef881 | p@chr11:44884533..44884555, + |
| 3.59e-30 | FFCP PHASE2:Hg19::chr1:33338030..33338037,-#_187ebb976ab2f2f962656d48f8e9385c | p9@FNDC5 |
| 3.59e-30 | FFCP PHASE1:Hg19::chr1:33338030..33338037,-#_187ebb976ab2f2f962656d48f8e9385c | p9@FNDC5 |
| 1.15e-29 | FFCP PHASE1:Hg19::chr2:189387474..189387512,+#_46031c4726a33e2d413d2a57911162c7 | p11@GULP1 |
| 1.15e-29 | FFCP PHASE2:Hg19::chr2:189387474..189387512,+#_46031c4726a33e2d413d2a57911162c7 | p11@GULP1 |
| 1.62e-29 | FFCP PHASE1:Hg19::chr2:175629150..175629163,-#_ecaebb14d43df4022f8e2baac7438380 | p2@CHRNA1 |
| 1.62e-29 | FFCP PHASE2:Hg19::chr2:175629150..175629163,-#_ecaebb14d43df4022f8e2baac7438380 | p2@CHRNA1 |
