CL:0000501: Difference between revisions

Latest revision as of 16:34, 12 September 2014

granulosa cell

Namespace:

FANTOM

Definition:

"A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [MESH:A.05.360.319.114.630.535.200]

Xrefs:

Expandlinks:

Synonyms:

"granulosa cell of ovary" EXACT []

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000174(steroid hormone secreting cell),CL:0002174(follicular cell of ovary)

Children

derives from:	FF:0102285 (granulosa cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

10624-108H3 (granulosa cell tumor cell line:KGN)

Mouse (Mus musculus)

10624-108H3 (granulosa cell tumor cell line:KGN)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000501 (granulosa cell), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
4.66e-66	FFCP PHASE1:Hg19::chr1:248067410..248067413,+	p@chr1:248067410..248067413, +
4.66e-66	FFCP PHASE2:Hg19::chr1:248067410..248067413,+	p@chr1:248067410..248067413, +
1.46e-50	FFCP PHASE1:Hg19::chr2:227587084..227587105,+	p@chr2:227587084..227587105, +
1.46e-50	FFCP PHASE2:Hg19::chr2:227587084..227587105,+	p@chr2:227587084..227587105, +
2.42e-50	FFCP PHASE2:Hg19::chr12:78359973..78359982,+	p34@NAV3
2.42e-50	FFCP PHASE1:Hg19::chr12:78359973..78359982,+	p34@NAV3
1.48e-40	FFCP PHASE1:Hg19::chr11:77282391..77282402,+	p@chr11:77282391..77282402, +
1.48e-40	FFCP PHASE2:Hg19::chr11:77282391..77282402,+	p@chr11:77282391..77282402, +
2.21e-40	FFCP PHASE1:Hg19::chr9:124044161..124044173,+	p@chr9:124044161..124044173, +
2.21e-40	FFCP PHASE2:Hg19::chr9:124044161..124044173,+	p@chr9:124044161..124044173, +
3.61e-34	FFCP PHASE1:Hg19::chr1:185853036..185853046,+	p@chr1:185853036..185853046, +
3.61e-34	FFCP PHASE2:Hg19::chr1:185853036..185853046,+	p@chr1:185853036..185853046, +
5.05e-34	FFCP PHASE1:Hg19::chr4:138999555..138999575,-	p@chr4:138999555..138999575, -
5.05e-34	FFCP PHASE1:Hg19::chr1:186116540..186116557,+	p@chr1:186116540..186116557, +
5.05e-34	FFCP PHASE2:Hg19::chr1:248080895..248080906,+	p@chr1:248080895..248080906, +
5.05e-34	FFCP PHASE2:Hg19::chr4:138999555..138999575,-	p@chr4:138999555..138999575, -
5.05e-34	FFCP PHASE2:Hg19::chr1:186116540..186116557,+	p@chr1:186116540..186116557, +
5.05e-34	FFCP PHASE1:Hg19::chr1:248080895..248080906,+	p@chr1:248080895..248080906, +
7.06e-34	FFCP PHASE2:Hg19::chr1:185720104..185720113,+	p@chr1:185720104..185720113, +
7.06e-34	FFCP PHASE1:Hg19::chr1:185720104..185720113,+	p@chr1:185720104..185720113, +
9.99e-30	FFCP PHASE1:Hg19::chr5:145427166..145427178,+	p@chr5:145427166..145427178, +
9.99e-30	FFCP PHASE2:Hg19::chr5:145427166..145427178,+	p@chr5:145427166..145427178, +
1.33e-29	FFCP PHASE1:Hg19::chr18:19748482..19748490,-	p@chr18:19748482..19748490, -
1.33e-29	FFCP PHASE2:Hg19::chr3:111633072..111633073,+	p@chr3:111633072..111633073, +
1.33e-29	FFCP PHASE1:Hg19::chr9:32783532..32783551,+	p2@TMEM215
1.33e-29	FFCP PHASE2:Hg19::chr18:19748482..19748490,-	p@chr18:19748482..19748490, -
1.33e-29	FFCP PHASE1:Hg19::chr3:111633072..111633073,+	p@chr3:111633072..111633073, +
1.33e-29	FFCP PHASE2:Hg19::chr9:32783532..32783551,+	p2@TMEM215
2.37e-29	FFCP PHASE2:Hg19::chr11:46848363..46848374,-	p6@CKAP5
2.37e-29	FFCP PHASE2:Hg19::chr8:11534512..11534519,+	p7@GATA4
2.37e-29	FFCP PHASE1:Hg19::chr11:120110546..120110551,-	p@chr11:120110546..120110551, -
2.37e-29	FFCP PHASE1:Hg19::chr11:46848363..46848374,-	p6@CKAP5
2.37e-29	FFCP PHASE1:Hg19::chr6:5261661..5261664,-	p7@LYRM4
2.37e-29	FFCP PHASE2:Hg19::chr11:120110546..120110551,-	p@chr11:120110546..120110551, -
2.37e-29	FFCP PHASE1:Hg19::chr8:11534512..11534519,+	p7@GATA4
2.37e-29	FFCP PHASE2:Hg19::chr6:5261661..5261664,-	p7@LYRM4
3.16e-29	FFCP PHASE1:Hg19::chr2:49381628..49381639,-	p2@FSHR
3.16e-29	FFCP PHASE2:Hg19::chr2:49381628..49381639,-	p2@FSHR
2.16e-26	FFCP PHASE2:Hg19::chr11:46887017..46887024,-	p@chr11:46887017..46887024, -
2.16e-26	FFCP PHASE1:Hg19::chr11:46887017..46887024,-	p@chr11:46887017..46887024, -
3.58e-26	FFCP PHASE1:Hg19::chr17:6374648..6374688,-	p@chr17:6374648..6374688, -
3.58e-26	FFCP PHASE2:Hg19::chr17:6374648..6374688,-	p@chr17:6374648..6374688, -
1.26e-25	FFCP PHASE1:Hg19::chr5:145340760..145340764,+	p@chr5:145340760..145340764, +
1.26e-25	FFCP PHASE2:Hg19::chr5:145340760..145340764,+	p@chr5:145340760..145340764, +
1.34e-23	FFCP PHASE1:Hg19::chr5:83644408..83644410,-	p@chr5:83644408..83644410, -
1.34e-23	FFCP PHASE2:Hg19::chr5:83644408..83644410,-	p@chr5:83644408..83644410, -
1.67e-23	FFCP PHASE1:Hg19::chr3:197026018..197026029,-	p34@DLG1
1.67e-23	FFCP PHASE2:Hg19::chr3:197026018..197026029,-	p34@DLG1
3.28e-23	FFCP PHASE2:Hg19::chr11:1580303..1580327,-	p@chr11:1580303..1580327, -
3.28e-23	FFCP PHASE1:Hg19::chr11:1580303..1580327,-	p@chr11:1580303..1580327, -
4.1e-23	FFCP PHASE1:Hg19::chr2:204534759..204534765,+	p@chr2:204534759..204534765, +
4.1e-23	FFCP PHASE2:Hg19::chr2:204534759..204534765,+	p@chr2:204534759..204534765, +
5.13e-23	FFCP PHASE1:Hg19::chr10:45496353..45496379,-	p6@C10orf25
5.13e-23	FFCP PHASE2:Hg19::chr10:45496353..45496379,-	p6@C10orf25
1.88e-21	FFCP PHASE2:Hg19::chr3:96336938..96336956,-	p@chr3:96336938..96336956, -
1.88e-21	FFCP PHASE1:Hg19::chr3:96336938..96336956,-	p@chr3:96336938..96336956, -
2.3e-21	FFCP PHASE1:Hg19::chr3:87004049..87004053,-	p@chr3:87004049..87004053, -
2.3e-21	FFCP PHASE2:Hg19::chr3:87004049..87004053,-	p@chr3:87004049..87004053, -
2.82e-21	FFCP PHASE1:Hg19::chr12:78359984..78359998,+	p19@NAV3
2.82e-21	FFCP PHASE1:Hg19::chr1:225962665..225962674,+	p@chr1:225962665..225962674, +
2.82e-21	FFCP PHASE2:Hg19::chr1:225962665..225962674,+	p@chr1:225962665..225962674, +
2.82e-21	FFCP PHASE2:Hg19::chr12:78359984..78359998,+	p19@NAV3
5.16e-21	FFCP PHASE2:Hg19::chr11:503354..503369,+	p@chr11:503354..503369, +
5.16e-21	FFCP PHASE1:Hg19::chr11:503354..503369,+	p@chr11:503354..503369, +
1.08e-19	FFCP PHASE1:Hg19::chr12:78359999..78360035,+	p13@NAV3
1.08e-19	FFCP PHASE2:Hg19::chr12:78359999..78360035,+	p13@NAV3
1.3e-19	FFCP PHASE1:Hg19::chr3:138666029..138666038,-	p8@FOXL2
1.3e-19	FFCP PHASE2:Hg19::chr3:138666029..138666038,-	p8@FOXL2
2.25e-19	FFCP PHASE2:Hg19::chr1:185880819..185880830,+	p@chr1:185880819..185880830, +
2.25e-19	FFCP PHASE1:Hg19::chr1:185880819..185880830,+	p@chr1:185880819..185880830, +
2.71e-19	FFCP PHASE1:Hg19::chr3:69442476..69442481,-	p@chr3:69442476..69442481, -
2.71e-19	FFCP PHASE2:Hg19::chr10:47081891..47081936,+	p@chr10:47081891..47081936, +
2.71e-19	FFCP PHASE1:Hg19::chr15:80843472..80843480,+	p22@ARNT2
2.71e-19	FFCP PHASE2:Hg19::chr13:45694574..45694578,+	p6@GTF2F2
2.71e-19	FFCP PHASE2:Hg19::chr3:69442476..69442481,-	p@chr3:69442476..69442481, -
2.71e-19	FFCP PHASE1:Hg19::chr10:47081891..47081936,+	p@chr10:47081891..47081936, +
2.71e-19	FFCP PHASE1:Hg19::chr4:40848340..40848344,-	p@chr4:40848340..40848344, -
2.71e-19	FFCP PHASE1:Hg19::chr13:45694574..45694578,+	p6@GTF2F2
2.71e-19	FFCP PHASE2:Hg19::chr15:80843472..80843480,+	p22@ARNT2
2.71e-19	FFCP PHASE2:Hg19::chr4:40848340..40848344,-	p@chr4:40848340..40848344, -
3.25e-19	FFCP PHASE2:Hg19::chr18:10979606..10979617,-	p@chr18:10979606..10979617, -
3.25e-19	FFCP PHASE1:Hg19::chr18:10979606..10979617,-	p@chr18:10979606..10979617, -
4.69e-19	FFCP PHASE1:Hg19::chr11:29450724..29450728,+	p@chr11:29450724..29450728, +
4.69e-19	FFCP PHASE2:Hg19::chr11:29450724..29450728,+	p@chr11:29450724..29450728, +
5.26e-18	FFCP PHASE1:Hg19::chr1:186159161..186159177,+	p@chr1:186159161..186159177, +
5.26e-18	FFCP PHASE2:Hg19::chr1:186159161..186159177,+	p@chr1:186159161..186159177, +
6.23e-18	FFCP PHASE1:Hg19::chr15:74220226..74220237,-	p6@LOC100287616
6.23e-18	FFCP PHASE1:Hg19::chr3:197640146..197640157,-	p7@IQCG
6.23e-18	FFCP PHASE2:Hg19::chr15:74220226..74220237,-	p6@LOC100287616
6.23e-18	FFCP PHASE2:Hg19::chr3:197640146..197640157,-	p7@IQCG
7.37e-18	FFCP PHASE2:Hg19::chr20:2795626..2795639,+	p1@C20orf141, p1@TMEM239
7.37e-18	FFCP PHASE1:Hg19::chr5:14231969..14231971,+	p@chr5:14231969..14231971, +
7.37e-18	FFCP PHASE2:Hg19::chr5:14231969..14231971,+	p@chr5:14231969..14231971, +
7.37e-18	FFCP PHASE1:Hg19::chr20:2795626..2795639,+	p1@C20orf141, p1@TMEM239
1.03e-17	FFCP PHASE1:Hg19::chr7:45928011..45928026,+	p4@IGFBP1
1.03e-17	FFCP PHASE2:Hg19::chr7:45928011..45928026,+	p4@IGFBP1
1.22e-17	FFCP PHASE1:Hg19::chr3:138666453..138666470,+	p4@C3orf72
1.22e-17	FFCP PHASE2:Hg19::chr3:138666453..138666470,+	p4@C3orf72
1.04e-16	FFCP PHASE2:Hg19::chr3:197026004..197026017,-	p22@DLG1
1.04e-16	FFCP PHASE1:Hg19::chr2:49381646..49381667,-	p1@FSHR

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{CL
-|id=CL:0000501
+|alt_id=
-|name=granulosa cell
-|namespace=cell;;efo
-|def="A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [MESH:A.05.360.319.114.630.535.200]
-|xref=BTO:0000542;;FMA:18718
-|is_a=CL:0000174;;CL:0002174;;EFO:0002962
-|synonym="granulosa cell of ovary" EXACT []
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [MESH:A.05.360.319.114.630.535.200]
-|subset=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=CL:0000501
+|is_a=CL:0000174 ;;CL:0002174
+|is_obsolete=
 |located_in=
+|name=granulosa cell
+|namespace=FANTOM
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="granulosa cell of ovary" EXACT []
+|union_of=
+|xref=BTO:0000542;;FMA:18718
 }}

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From FANTOM5_SSTAR

Latest revision as of 16:34, 12 September 2014

Ontology Tree: Loaded from BioPortal

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