Personal tools

CL:0002194: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002194
|alt_id=
|name=monopoietic cell
|namespace=cell;;efo
|def="A cell involved in the formation of a monocyte (monopoiesis)." [GOC:tfm]
|xref=FMA:83552
|is_a=CL:0000839
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-08-30T01:27:48Z
|def="A cell involved in the formation of a monocyte (monopoiesis)." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002194
|is_a=CL:0000839
|is_obsolete=
|located_in=
|located_in=
|name=monopoietic cell
|namespace=FANTOM
|obo_creation_date=2010-08-30T01:27:48Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:83552
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:monopoietic cell
Namespace:FANTOM
Definition:"A cell involved in the formation of a monocyte (monopoiesis)." [GOC:tfm]
Xrefs:
links:
FMA:83552
Created by:tmeehan
Creation date:2010-08-30T01:27:48Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000839(myeloid lineage restricted progenitor cell)



Children


is a:CL:0000040 (monoblast),CL:0000559 (promonocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002194 (monopoietic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.04e-147FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_fc48500d2b8bde3a2104e2a150aa0ec5p@chr7:77050554..77050601, +
1.04e-147FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_fc48500d2b8bde3a2104e2a150aa0ec5p@chr7:77050554..77050601, +
5.64e-145FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_66f7debb4cf2daa8fa7c5a37a5ea15a4p5@IFI30
5.64e-145FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_66f7debb4cf2daa8fa7c5a37a5ea15a4p5@IFI30
4.95e-140FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_ce4ec1d7e74a7b5d5689b8026f623450p7@IFI30
4.95e-140FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_ce4ec1d7e74a7b5d5689b8026f623450p7@IFI30
5.06e-140FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_cb1842875899dc8968d1ce770ee83068p15@MGAT1
5.06e-140FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_cb1842875899dc8968d1ce770ee83068p15@MGAT1
1.31e-139FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_f28b5500c5d33a7edce9594558e9df79p@chr1:161188661..161188679, +
1.31e-139FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_f28b5500c5d33a7edce9594558e9df79p@chr1:161188661..161188679, +
5.87e-136FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_159f615c578b2e30bb5e0fb5ea746044p1@CYP1B1-AS1
5.87e-136FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_159f615c578b2e30bb5e0fb5ea746044p1@CYP1B1-AS1
5.37e-135FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_dbe454c9e2f94dd26e049f36b4829ef9p@chr4:185314125..185314143, -
5.37e-135FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_dbe454c9e2f94dd26e049f36b4829ef9p@chr4:185314125..185314143, -
3.75e-134FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_1e47892e3a17ef3c1ff85da26c0a3cf7p7@RNF13
3.75e-134FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_1e47892e3a17ef3c1ff85da26c0a3cf7p7@RNF13
6.15e-134FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_39ef93fe8e60d0951b6a20de358514a4p@chr2:119726719..119726744, +
6.15e-134FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_39ef93fe8e60d0951b6a20de358514a4p@chr2:119726719..119726744, +
7.41e-134FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_c24833b689f096c9011168e75fb0fd73p@chr1:161187824..161187847, +
7.41e-134FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_c24833b689f096c9011168e75fb0fd73p@chr1:161187824..161187847, +
2.24e-133FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_cb511369a605ab67c256496b7611c59dp@chr17:7482481..7482508, -
2.24e-133FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_cb511369a605ab67c256496b7611c59dp@chr17:7482481..7482508, -
4.55e-133FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_9a606660cc0c44cf72ee9c6727d7db58p@chr19:18286116..18286156, +
4.55e-133FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_9a606660cc0c44cf72ee9c6727d7db58p@chr19:18286116..18286156, +
1.09e-132FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_c16913efb16c6fc99a0cfff7572d44d2p@chr4:185314151..185314178, -
1.09e-132FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_c16913efb16c6fc99a0cfff7572d44d2p@chr4:185314151..185314178, -
1.13e-132FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_f252feb5852ca2c24835ed087f6ea66fp1@ENST00000425320
1.13e-132FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_f252feb5852ca2c24835ed087f6ea66fp1@ENST00000425320
1.42e-132FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_b04985d739446b725d1856f66d7dbd7cp@chr2:145429606..145429658, +
1.42e-132FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_b04985d739446b725d1856f66d7dbd7cp@chr2:145429606..145429658, +
1.21e-131FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_1b96a90bcf7b3a7d8d226e613e69dc27p@chr19:18288064..18288080, +
1.21e-131FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_1b96a90bcf7b3a7d8d226e613e69dc27p@chr19:18288064..18288080, +
2.27e-131FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_108a6456c99e39a121de0b34ab6cf09ep8@CTSS
2.27e-131FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_108a6456c99e39a121de0b34ab6cf09ep8@CTSS
2.82e-131FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_6970b50a6f76e57d6911c9c3f9bca0f9p@chrX:37664331..37664352, +
2.82e-131FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_6970b50a6f76e57d6911c9c3f9bca0f9p@chrX:37664331..37664352, +
4.07e-131FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_ccc7d33ee4a801bdedf504676d3dc5d3p@chr4:185314188..185314207, -
4.07e-131FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_ccc7d33ee4a801bdedf504676d3dc5d3p@chr4:185314188..185314207, -
5.24e-131FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_dd5a8d0d440c16e90c435d1be5228aa7p@chr15:65174546..65174583, -
5.24e-131FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_dd5a8d0d440c16e90c435d1be5228aa7p@chr15:65174546..65174583, -
2.76e-130FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_cb6b17160f112468aa167c0c8e237a23p7@FNIP2
2.76e-130FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_cb6b17160f112468aa167c0c8e237a23p7@FNIP2
3.58e-130FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_1d416005c90e6ecfa3795cbae55ffc8fp@chr1:161188746..161188758, +
3.58e-130FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_1d416005c90e6ecfa3795cbae55ffc8fp@chr1:161188746..161188758, +
2.17e-129FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_71e50a397895f097737b30ae79620954p@chr20:1517991..1518011, -
2.17e-129FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_71e50a397895f097737b30ae79620954p@chr20:1517991..1518011, -
3.46e-129FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_fb38170bd8320f4a215a6c591c3ab99ap7@EMILIN2
3.46e-129FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_fb38170bd8320f4a215a6c591c3ab99ap7@EMILIN2
1.47e-128FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_360e44a66befafa1a373b4f46bd66691p6@IFI30
1.47e-128FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_360e44a66befafa1a373b4f46bd66691p6@IFI30
1.78e-128FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_8108e2130a7df140ac602f684c6cb5c8p5@CU676849, p5@CU689079
1.78e-128FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_8108e2130a7df140ac602f684c6cb5c8p5@CU676849, p5@CU689079
2.01e-128FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_d38befdc44c77c1e28963781b843e29ap12@MGAT1
2.01e-128FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_d38befdc44c77c1e28963781b843e29ap12@MGAT1
2.32e-127FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_d0b0d953855cd7f76c96714b0e1e90fcp1@AK126179
2.32e-127FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_d0b0d953855cd7f76c96714b0e1e90fcp1@AK126179
2.49e-127FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_6d52f2069ead9bab44caaa0dada85ca5p@chr17:7483714..7483726, +
2.49e-127FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_6d52f2069ead9bab44caaa0dada85ca5p@chr17:7483714..7483726, +
1.19e-126FFCP PHASE2:Hg19::chr22:46998103..46998127,-#_8a7dd4ac13ae72b5403bcf3add55d2ecp@chr22:46998103..46998127, -
1.19e-126FFCP PHASE1:Hg19::chr22:46998103..46998127,-#_8a7dd4ac13ae72b5403bcf3add55d2ecp@chr22:46998103..46998127, -
2.16e-126FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_faf39ef16111e8a025f0c339a76fe83bp@chr19:18285955..18285972, +
2.16e-126FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_faf39ef16111e8a025f0c339a76fe83bp@chr19:18285955..18285972, +
3.83e-126FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_422390fc834a7836aedd13078090d92bp@chr19:51625924..51625942, +
3.83e-126FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_422390fc834a7836aedd13078090d92bp@chr19:51625924..51625942, +
7.27e-126FFCP PHASE1:Hg19::chr4:185266972..185267007,+#_0e52c43b79b39084f54651f976c9f70cp@chr4:185266972..185267007, +
7.27e-126FFCP PHASE2:Hg19::chr4:185266972..185267007,+#_0e52c43b79b39084f54651f976c9f70cp@chr4:185266972..185267007, +
2.66e-125FFCP PHASE2:Hg19::chrX:152086449..152086473,+#_5f8c5f4e31a65102a86853ec9e8e419bp4@ZNF185
2.66e-125FFCP PHASE1:Hg19::chrX:152086449..152086473,+#_5f8c5f4e31a65102a86853ec9e8e419bp4@ZNF185
7.73e-125FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_d58bce95d57f6cbd44926ca153fdbcd4p2@ZEB2-AS1
7.73e-125FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_d58bce95d57f6cbd44926ca153fdbcd4p2@ZEB2-AS1
8.12e-125FFCP PHASE2:Hg19::chr15:59469817..59469836,+#_e1d95fe710e491f921a47450729d7dddp@chr15:59469817..59469836, +
8.12e-125FFCP PHASE1:Hg19::chr15:59469817..59469836,+#_e1d95fe710e491f921a47450729d7dddp@chr15:59469817..59469836, +
1.56e-124FFCP PHASE2:Hg19::chr20:1517945..1517963,-#_9fafb98ac511ec766bb60499a497d515p@chr20:1517945..1517963, -
1.56e-124FFCP PHASE1:Hg19::chr20:1517945..1517963,-#_9fafb98ac511ec766bb60499a497d515p@chr20:1517945..1517963, -
1.65e-124FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_cd5daa476397d657eb131f85afc8a568p@chr8:116588888..116588904, +
1.65e-124FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_cd5daa476397d657eb131f85afc8a568p@chr8:116588888..116588904, +
1.87e-124FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_52c588c25cf5e0e1ce8e003b78bcd927p@chr1:161188686..161188721, +
1.87e-124FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_52c588c25cf5e0e1ce8e003b78bcd927p@chr1:161188686..161188721, +
7.08e-124FFCP PHASE1:Hg19::chr5:77845080..77845099,-#_9049ed767a0e067f9bc933d8af6b5bfap10@LHFPL2
7.08e-124FFCP PHASE2:Hg19::chr5:77845080..77845099,-#_9049ed767a0e067f9bc933d8af6b5bfap10@LHFPL2
1.48e-123FFCP PHASE1:Hg19::chr9:137264970..137264982,+#_78254e1f8e29731f6b18c3172133bfa3p@chr9:137264970..137264982, +
1.48e-123FFCP PHASE2:Hg19::chr9:137264970..137264982,+#_78254e1f8e29731f6b18c3172133bfa3p@chr9:137264970..137264982, +
6.01e-123FFCP PHASE1:Hg19::chr17:47294661..47294681,+#_ae5bb63921d599e91d9ae87a1e5fc72ap@chr17:47294661..47294681, +
6.01e-123FFCP PHASE2:Hg19::chr17:47294661..47294681,+#_ae5bb63921d599e91d9ae87a1e5fc72ap@chr17:47294661..47294681, +
1.14e-122FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_397a1b78f8a25c5d40e910460d8e0f40p@chr1:108593061..108593077, +
1.14e-122FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_397a1b78f8a25c5d40e910460d8e0f40p@chr1:108593061..108593077, +
2.07e-122FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_8a09e7ac925574d5b0ef69f1755b57cep@chrX:153286067..153286101, -
2.07e-122FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_8a09e7ac925574d5b0ef69f1755b57cep@chrX:153286067..153286101, -
3.07e-122FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_9dbf10e3e554dd519f586ad5e5408b73p@chr14:103587759..103587770, +
3.07e-122FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_9dbf10e3e554dd519f586ad5e5408b73p@chr14:103587759..103587770, +
7.82e-122FFCP PHASE1:Hg19::chr1:17945095..17945126,+#_ba83fe22aaab5db29447fc6e5d5b5b04p7@ARHGEF10L
7.82e-122FFCP PHASE2:Hg19::chr1:17945095..17945126,+#_ba83fe22aaab5db29447fc6e5d5b5b04p7@ARHGEF10L
3.27e-121FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_e24a56e32fcc21cccc3af2b0eee2f355p@chr16:50313426..50313459, +
3.27e-121FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_e24a56e32fcc21cccc3af2b0eee2f355p@chr16:50313426..50313459, +
3.74e-121FFCP PHASE2:Hg19::chr10:20105868..20105875,+#_548c3334c06793748aa0d7b1b5df0335p8@PLXDC2
3.74e-121FFCP PHASE1:Hg19::chr10:20105868..20105875,+#_548c3334c06793748aa0d7b1b5df0335p8@PLXDC2
7.36e-121FFCP PHASE2:Hg19::chr1:150705526..150705571,-#_a5f70f8ad7942fee6e7b93597d3b3a99p@chr1:150705526..150705571, -
7.36e-121FFCP PHASE1:Hg19::chr1:150705526..150705571,-#_a5f70f8ad7942fee6e7b93597d3b3a99p@chr1:150705526..150705571, -
1.75e-120FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_e2eef70d7ec48f1a463d98d163c2dad4p@chr19:18283959..18283993, +
1.75e-120FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_e2eef70d7ec48f1a463d98d163c2dad4p@chr19:18283959..18283993, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002194&oldid=3275427"