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{{CL
{{CL
|id=CL:0002428
|alt_id=
|name=double-positive blast
|namespace=efo
|def="A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=
|is_a=CL:0000809
|synonym="activated double-positive thymocyte" EXACT [];;"T.DPb.Th" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-21T01:59:11Z
|def="A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0002427
|develops_from=CL:0002427
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002428
|is_a=CL:0000809
|is_obsolete=
|located_in=
|located_in=
|name=double-positive blast
|namespace=FANTOM
|obo_creation_date=2010-10-21T01:59:11Z
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="activated double-positive thymocyte" EXACT [];;"T.DPb.Th" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:42, 12 September 2014

Name:double-positive blast
Namespace:FANTOM
Definition:"A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating." [GOC:tfm, http://www.immgen.org/index_content.html]
Synonyms: "activated double-positive thymocyte" EXACT []
"T.DPb.Th" EXACT []
Created by:tmeehan
Creation date:2010-10-21T01:59:11Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000809(double-positive, alpha-beta thymocyte)
develops_from:CL:0002427(resting double-positive thymocyte)



Children


develops from:CL:0002429 (CD69-positive double-positive thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002428 (double-positive blast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_a8efffe4afdfe11eaa9f5f5514487af3p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_a8efffe4afdfe11eaa9f5f5514487af3p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_a8efffe4afdfe11eaa9f5f5514487af3p4@APOBEC4
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_a8efffe4afdfe11eaa9f5f5514487af3p4@APOBEC4
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_5ef40ddee33f4e4db68e689af54f7974p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_5ef40ddee33f4e4db68e689af54f7974p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_5ef40ddee33f4e4db68e689af54f7974p@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_5ef40ddee33f4e4db68e689af54f7974p@chrX:54476786..54476810, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_d5e1273a7b6e64db9579f43df6f2ad70p@chr16:52032670..52032685, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_d5e1273a7b6e64db9579f43df6f2ad70p@chr16:52032670..52032685, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_5cfebcd9cc769f1909508f73fe8cbe68p1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_5cfebcd9cc769f1909508f73fe8cbe68p@chr16:93777453..93777464, +
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_5cfebcd9cc769f1909508f73fe8cbe68p1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_5cfebcd9cc769f1909508f73fe8cbe68p@chr16:93777453..93777464, +
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_33da1f3c608128ceb45c4124a26e3dc9p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_33da1f3c608128ceb45c4124a26e3dc9p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_33da1f3c608128ceb45c4124a26e3dc9p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_33da1f3c608128ceb45c4124a26e3dc9p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_33da1f3c608128ceb45c4124a26e3dc9p@chr14:122362270..122362291, -
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_bf403aa658e002a8faf96f297e8fe92fp17@ANXA1
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_bf403aa658e002a8faf96f297e8fe92fp17@ANXA1
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_0ede3157521012538d77d8af6db57daep@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_0ede3157521012538d77d8af6db57daep@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_0ede3157521012538d77d8af6db57daep@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_0ede3157521012538d77d8af6db57daep@chr11:118209514..118209525, +
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_0ede3157521012538d77d8af6db57daep@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_0ede3157521012538d77d8af6db57daep@chr11:118209514..118209525, +
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_655adcb824af2bcbb1d1edf1f0e93c12p@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_655adcb824af2bcbb1d1edf1f0e93c12p@chr14:53242248..53242261, +
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_69452ecbf88935c6f6b080b0bca631c2p4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_69452ecbf88935c6f6b080b0bca631c2p4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_186f27366d29836316228548235ed222p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_186f27366d29836316228548235ed222p10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_186f27366d29836316228548235ed222p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_186f27366d29836316228548235ed222p10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_186f27366d29836316228548235ed222p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_186f27366d29836316228548235ed222p@chr5:123465978..123465989, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_f4c1f83fa2e26df9549f66c5ba3d8929p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_f4c1f83fa2e26df9549f66c5ba3d8929p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f4c1f83fa2e26df9549f66c5ba3d8929p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_f4c1f83fa2e26df9549f66c5ba3d8929p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_f4c1f83fa2e26df9549f66c5ba3d8929p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_f4c1f83fa2e26df9549f66c5ba3d8929p@chr6:41504409..41504422, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_44dffa77b0b46561d678e3510f588ea6p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_44dffa77b0b46561d678e3510f588ea6p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_8c59c1735a4c969fe101ac38281bc986p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_8c59c1735a4c969fe101ac38281bc986p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_8c59c1735a4c969fe101ac38281bc986p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_8c59c1735a4c969fe101ac38281bc986p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_8c59c1735a4c969fe101ac38281bc986p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_8c59c1735a4c969fe101ac38281bc986p@chr11:46200110..46200124, -
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_84de21ca8a89ea6556de5923df53518bp@chr2:11097490..11097500, +
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_84de21ca8a89ea6556de5923df53518bp@chr2:11097490..11097500, +
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_95c08f348d07c40a9067ba0bd0e237b4p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_95c08f348d07c40a9067ba0bd0e237b4p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_95c08f348d07c40a9067ba0bd0e237b4p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_95c08f348d07c40a9067ba0bd0e237b4p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_95c08f348d07c40a9067ba0bd0e237b4p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_95c08f348d07c40a9067ba0bd0e237b4p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_95c08f348d07c40a9067ba0bd0e237b4p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_95c08f348d07c40a9067ba0bd0e237b4p@chr10:128157769..128157772, -
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_7d0b7930c502f02e2d76dd21a3c46eb5p1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_7d0b7930c502f02e2d76dd21a3c46eb5p1@ENSMUST00000103582
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_dc37b7c6df4610c5f9c11266f30ae19dp@chr2:73290853..73290866, +
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_dc37b7c6df4610c5f9c11266f30ae19dp@chr2:73290853..73290866, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_81907bd9eb74af6e4d1f5868319d08a4p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_81907bd9eb74af6e4d1f5868319d08a4p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_81907bd9eb74af6e4d1f5868319d08a4p8@Folr4
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_81907bd9eb74af6e4d1f5868319d08a4p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_81907bd9eb74af6e4d1f5868319d08a4p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_81907bd9eb74af6e4d1f5868319d08a4p8@Folr4
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_e76e657b7d013104c5a4376442f6e07ep@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_e76e657b7d013104c5a4376442f6e07ep4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_e76e657b7d013104c5a4376442f6e07ep@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_e76e657b7d013104c5a4376442f6e07ep@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_e76e657b7d013104c5a4376442f6e07ep4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_e76e657b7d013104c5a4376442f6e07ep@chr11:87558695..87558707, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_8cffb025c16829c1bc7942d7cca74859p@chr4:32339235..32339263, +
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_8cffb025c16829c1bc7942d7cca74859p@chr4:32339235..32339263, +
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_2f5a3aaf7850635dd2fa36d72aa40082p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_2f5a3aaf7850635dd2fa36d72aa40082p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_2f5a3aaf7850635dd2fa36d72aa40082p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_2f5a3aaf7850635dd2fa36d72aa40082p3@uc007ytl.1
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_816b8e13bd81ef2f8855c82eeea7e633p1@ENSMUST00000103733
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_816b8e13bd81ef2f8855c82eeea7e633p1@ENSMUST00000103733
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_f580117a2980f4edb9228d4b624305d5p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_f580117a2980f4edb9228d4b624305d5p3@Tnfrsf25
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_f580117a2980f4edb9228d4b624305d5p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_f580117a2980f4edb9228d4b624305d5p@chr4:32339511..32339518, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_7fdf798fedaaa543be00276add03b3acp@chr6:48656532..48656548, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_7fdf798fedaaa543be00276add03b3acp@chr6:48656532..48656548, +
3.91e-58FFCP PHASE1:Mm9::chr7:31208644..31208663,+#_bdf9175b2a68082d011d94deb89fd172p@chr7:31208644..31208663, +
3.91e-58FFCP PHASE2:Mm9::chr12:4917295..4917301,-#_bdf9175b2a68082d011d94deb89fd172p@chr12:4917295..4917301, -

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