CL:0002428: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=double-positive blast | |name=double-positive blast | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-10-21T01:59:11Z | |obo_creation_date=2010-10-21T01:59:11Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:42, 12 September 2014
| Name: | double-positive blast |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating." [GOC:tfm, http://www.immgen.org/index_content.html] |
| Synonyms: |
"activated double-positive thymocyte" EXACT [] "T.DPb.Th" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2010-10-21T01:59:11Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000809(double-positive, alpha-beta thymocyte) |
|---|---|
| develops_from: | CL:0002427(resting double-positive thymocyte) |
Children
| develops from: | CL:0002429 (CD69-positive double-positive thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002428 (double-positive blast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_a8efffe4afdfe11eaa9f5f5514487af3 | p4@APOBEC4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_a8efffe4afdfe11eaa9f5f5514487af3 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_a8efffe4afdfe11eaa9f5f5514487af3 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_a8efffe4afdfe11eaa9f5f5514487af3 | p4@APOBEC4 |
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_5ef40ddee33f4e4db68e689af54f7974 | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_5ef40ddee33f4e4db68e689af54f7974 | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_5ef40ddee33f4e4db68e689af54f7974 | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_5ef40ddee33f4e4db68e689af54f7974 | p@chr13:30878406..30878419, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_d5e1273a7b6e64db9579f43df6f2ad70 | p@chr16:52032670..52032685, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_d5e1273a7b6e64db9579f43df6f2ad70 | p@chr16:52032670..52032685, + |
| 2.41e-74 | FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_5cfebcd9cc769f1909508f73fe8cbe68 | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_5cfebcd9cc769f1909508f73fe8cbe68 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_5cfebcd9cc769f1909508f73fe8cbe68 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_5cfebcd9cc769f1909508f73fe8cbe68 | p1@ENSMUST00000103701 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_33da1f3c608128ceb45c4124a26e3dc9 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_33da1f3c608128ceb45c4124a26e3dc9 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_33da1f3c608128ceb45c4124a26e3dc9 | p@chr14:122362270..122362291, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_bf403aa658e002a8faf96f297e8fe92f | p17@ANXA1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_bf403aa658e002a8faf96f297e8fe92f | p17@ANXA1 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_0ede3157521012538d77d8af6db57dae | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_0ede3157521012538d77d8af6db57dae | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_0ede3157521012538d77d8af6db57dae | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_0ede3157521012538d77d8af6db57dae | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_0ede3157521012538d77d8af6db57dae | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_0ede3157521012538d77d8af6db57dae | p@chr20:37493438..37493456, - |
| 1.05e-65 | FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_655adcb824af2bcbb1d1edf1f0e93c12 | p@chr14:53242248..53242261, + |
| 1.05e-65 | FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_655adcb824af2bcbb1d1edf1f0e93c12 | p@chr14:53242248..53242261, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_69452ecbf88935c6f6b080b0bca631c2 | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 1.74e-65 | FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_69452ecbf88935c6f6b080b0bca631c2 | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 2.25e-65 | FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_186f27366d29836316228548235ed222 | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_186f27366d29836316228548235ed222 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_186f27366d29836316228548235ed222 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_186f27366d29836316228548235ed222 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_186f27366d29836316228548235ed222 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_186f27366d29836316228548235ed222 | p@chr5:123465978..123465989, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_f4c1f83fa2e26df9549f66c5ba3d8929 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_f4c1f83fa2e26df9549f66c5ba3d8929 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_f4c1f83fa2e26df9549f66c5ba3d8929 | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_f4c1f83fa2e26df9549f66c5ba3d8929 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f4c1f83fa2e26df9549f66c5ba3d8929 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_f4c1f83fa2e26df9549f66c5ba3d8929 | p@chr6:41504409..41504422, - |
| 3.74e-65 | FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_44dffa77b0b46561d678e3510f588ea6 | p@chr4:32328217..32328228, - |
| 3.74e-65 | FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_44dffa77b0b46561d678e3510f588ea6 | p@chr4:32328217..32328228, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_8c59c1735a4c969fe101ac38281bc986 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_8c59c1735a4c969fe101ac38281bc986 | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_8c59c1735a4c969fe101ac38281bc986 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_8c59c1735a4c969fe101ac38281bc986 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_8c59c1735a4c969fe101ac38281bc986 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_8c59c1735a4c969fe101ac38281bc986 | p@chr5:123465955..123465966, - |
| 1.0e-60 | FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_84de21ca8a89ea6556de5923df53518b | p@chr2:11097490..11097500, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_84de21ca8a89ea6556de5923df53518b | p@chr2:11097490..11097500, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_95c08f348d07c40a9067ba0bd0e237b4 | p@chr12:70398221..70398232, - |
| 1.77e-60 | FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_7d0b7930c502f02e2d76dd21a3c46eb5 | p1@ENSMUST00000103582 |
| 1.77e-60 | FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_7d0b7930c502f02e2d76dd21a3c46eb5 | p1@ENSMUST00000103582 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_dc37b7c6df4610c5f9c11266f30ae19d | p@chr2:73290853..73290866, + |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_dc37b7c6df4610c5f9c11266f30ae19d | p@chr2:73290853..73290866, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_81907bd9eb74af6e4d1f5868319d08a4 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_81907bd9eb74af6e4d1f5868319d08a4 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_81907bd9eb74af6e4d1f5868319d08a4 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_81907bd9eb74af6e4d1f5868319d08a4 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_81907bd9eb74af6e4d1f5868319d08a4 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_81907bd9eb74af6e4d1f5868319d08a4 | p@chr1:138476217..138476228, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_e76e657b7d013104c5a4376442f6e07e | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_e76e657b7d013104c5a4376442f6e07e | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_e76e657b7d013104c5a4376442f6e07e | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_e76e657b7d013104c5a4376442f6e07e | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_e76e657b7d013104c5a4376442f6e07e | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_e76e657b7d013104c5a4376442f6e07e | p@chr11:87558695..87558707, + |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_8cffb025c16829c1bc7942d7cca74859 | p@chr4:32339235..32339263, + |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_8cffb025c16829c1bc7942d7cca74859 | p@chr4:32339235..32339263, + |
| 1.71e-58 | FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_2f5a3aaf7850635dd2fa36d72aa40082 | p5@Cd6 |
| 1.71e-58 | FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_2f5a3aaf7850635dd2fa36d72aa40082 | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_2f5a3aaf7850635dd2fa36d72aa40082 | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_2f5a3aaf7850635dd2fa36d72aa40082 | p5@Cd6 |
| 2.15e-58 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_816b8e13bd81ef2f8855c82eeea7e633 | p1@ENSMUST00000103733 |
| 2.15e-58 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_816b8e13bd81ef2f8855c82eeea7e633 | p1@ENSMUST00000103733 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_f580117a2980f4edb9228d4b624305d5 | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_f580117a2980f4edb9228d4b624305d5 | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_f580117a2980f4edb9228d4b624305d5 | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_f580117a2980f4edb9228d4b624305d5 | p@chr4:32339511..32339518, + |
| 3.38e-58 | FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_7fdf798fedaaa543be00276add03b3ac | p@chr6:48656532..48656548, + |
| 3.38e-58 | FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_7fdf798fedaaa543be00276add03b3ac | p@chr6:48656532..48656548, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr7:31208431..31208442,+#_bdf9175b2a68082d011d94deb89fd172 | p6@Nfkbid |
| 3.91e-58 | FFCP PHASE2:Mm9::chr1:140038899..140038910,-#_bdf9175b2a68082d011d94deb89fd172 | p@chr1:140038899..140038910, - |
