CL:0002569: Difference between revisions

Latest revision as of 16:44, 12 September 2014

Name:	mesenchymal stem cell of umbilical cord
Namespace:	FANTOM
Definition:	"A mesenchymal stem cell of the umbilical cord." [GOC:tfm]
Created by:	tmeehan
Creation date:	2011-03-01T09:55:12Z

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000134(mesenchymal cell),CL:0000349(extraembryonic cell)
part_of:	UBERON:0003422(mesenchyme of umbilical cord)

Children

is a:	CL:0002568 (mesenchymal stem cell of Wharton's jelly)
derives from:	FF:0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample),FF:0000117 (human mesenchymal stem cell of umbilical cord blood sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
11628-122B8
11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)

Mouse (Mus musculus)

11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
11628-122B8
11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002569 (mesenchymal stem cell of umbilical cord), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
9.96e-60	FFCP PHASE1:Hg19::chr3:162256416..162256425,-	p@chr3:162256416..162256425, -
9.96e-60	FFCP PHASE2:Hg19::chr3:162256416..162256425,-	p@chr3:162256416..162256425, -
5.62e-43	FFCP PHASE2:Hg19::chr3:154801312..154801336,+	p29@MME
5.62e-43	FFCP PHASE1:Hg19::chr3:154801312..154801336,+	p29@MME
4.27e-34	FFCP PHASE2:Hg19::chr6:11354777..11354778,+	p@chr6:11354777..11354778, +
4.27e-34	FFCP PHASE1:Hg19::chr6:11354777..11354778,+	p@chr6:11354777..11354778, +
1.67e-25	FFCP PHASE2:Hg19::chr17:47039342..47039353,-	p@chr17:47039342..47039353, -
1.67e-25	FFCP PHASE1:Hg19::chr17:47039342..47039353,-	p@chr17:47039342..47039353, -
6.78e-23	FFCP PHASE1:Hg19::chr15:68805200..68805208,+	p@chr15:68805200..68805208, +
6.78e-23	FFCP PHASE2:Hg19::chr15:68805200..68805208,+	p@chr15:68805200..68805208, +
7.58e-23	FFCP PHASE2:Hg19::chr13:110840203..110840210,-	p@chr13:110840203..110840210, -
7.58e-23	FFCP PHASE1:Hg19::chr13:110840203..110840210,-	p@chr13:110840203..110840210, -
7.72e-22	FFCP PHASE1:Hg19::chr8:19615538..19615541,-	p12@CSGALNACT1
7.72e-22	FFCP PHASE2:Hg19::chr8:19615538..19615541,-	p12@CSGALNACT1
2.4e-20	FFCP PHASE1:Hg19::chr4:174429652..174429665,+	p@chr4:174429652..174429665, +
2.4e-20	FFCP PHASE2:Hg19::chr4:174429652..174429665,+	p@chr4:174429652..174429665, +
5.89e-20	FFCP PHASE1:Hg19::chr3:162156271..162156273,-	p@chr3:162156271..162156273, -
5.89e-20	FFCP PHASE2:Hg19::chr3:162156271..162156273,-	p@chr3:162156271..162156273, -
7.13e-20	FFCP PHASE2:Hg19::chr4:174427862..174427899,+	p@chr4:174427862..174427899, +
7.13e-20	FFCP PHASE1:Hg19::chr4:174427862..174427899,+	p@chr4:174427862..174427899, +
1.95e-18	FFCP PHASE2:Hg19::chr6:137243433..137243444,+	p2@SLC35D3
1.95e-18	FFCP PHASE1:Hg19::chr6:137243433..137243444,+	p2@SLC35D3
9.07e-18	FFCP PHASE2:Hg19::chr18:43690139..43690142,+	p@chr18:43690139..43690142, +
9.07e-18	FFCP PHASE1:Hg19::chrX:11502822..11502831,-	p@chrX:11502822..11502831, -
9.07e-18	FFCP PHASE1:Hg19::chr18:43690139..43690142,+	p@chr18:43690139..43690142, +
9.07e-18	FFCP PHASE1:Hg19::chr9:132596981..132596990,-	p6@C9orf78
9.07e-18	FFCP PHASE2:Hg19::chrX:11502822..11502831,-	p@chrX:11502822..11502831, -
9.07e-18	FFCP PHASE2:Hg19::chr9:132596981..132596990,-	p6@C9orf78
9.07e-18	FFCP PHASE1:Hg19::chr5:131543465..131543475,-	p@chr5:131543465..131543475, -
9.07e-18	FFCP PHASE2:Hg19::chr5:131543465..131543475,-	p@chr5:131543465..131543475, -
9.07e-18	FFCP PHASE1:Hg19::chr8:42623701..42623709,-	p4@CHRNA6
9.07e-18	FFCP PHASE2:Hg19::chr14:101159742..101159785,+	p@chr14:101159742..101159785, +
9.07e-18	FFCP PHASE2:Hg19::chr8:42623701..42623709,-	p4@CHRNA6
9.07e-18	FFCP PHASE2:Hg19::chr7:101461145..101461152,+	p@chr7:101461145..101461152, +
9.07e-18	FFCP PHASE1:Hg19::chr14:101159742..101159785,+	p@chr14:101159742..101159785, +
9.07e-18	FFCP PHASE1:Hg19::chr7:101461145..101461152,+	p@chr7:101461145..101461152, +
9.07e-18	FFCP PHASE2:Hg19::chr12:56912838..56912839,+	p@chr12:56912838..56912839, +
9.07e-18	FFCP PHASE2:Hg19::chr22:31495739..31495756,+	p33@SMTN
9.07e-18	FFCP PHASE1:Hg19::chr12:56912838..56912839,+	p@chr12:56912838..56912839, +
9.07e-18	FFCP PHASE2:Hg19::chr19:18543312..18543351,+	p@chr19:18543312..18543351, +
9.07e-18	FFCP PHASE1:Hg19::chr22:31495739..31495756,+	p33@SMTN
9.07e-18	FFCP PHASE1:Hg19::chr5:115626749..115626788,+	p6@COMMD10
9.07e-18	FFCP PHASE1:Hg19::chr19:18543312..18543351,+	p@chr19:18543312..18543351, +
9.07e-18	FFCP PHASE1:Hg19::chr3:194215033..194215040,-	p@chr3:194215033..194215040, -
9.07e-18	FFCP PHASE2:Hg19::chr5:115626749..115626788,+	p6@COMMD10
9.07e-18	FFCP PHASE2:Hg19::chr3:194215033..194215040,-	p@chr3:194215033..194215040, -
1.57e-17	FFCP PHASE1:Hg19::chr8:37003588..37003608,-	p@chr8:37003588..37003608, -
1.57e-17	FFCP PHASE2:Hg19::chr8:37003588..37003608,-	p@chr8:37003588..37003608, -
3.38e-16	FFCP PHASE2:Hg19::chr1:229041596..229041602,-	p@chr1:229041596..229041602, -
3.38e-16	FFCP PHASE1:Hg19::chr1:229041596..229041602,-	p@chr1:229041596..229041602, -
1.07e-15	FFCP PHASE2:Hg19::chr8:11653468..11653496,+	p9@FDFT1
1.07e-15	FFCP PHASE1:Hg19::chr8:11653468..11653496,+	p9@FDFT1
1.13e-15	FFCP PHASE2:Hg19::chr6:25004775..25004790,-	p@chr6:25004775..25004790, -
1.13e-15	FFCP PHASE1:Hg19::chr6:25004775..25004790,-	p@chr6:25004775..25004790, -
1.22e-15	FFCP PHASE2:Hg19::chr17:20824400..20824414,+	p4@ENST00000443508
1.22e-15	FFCP PHASE1:Hg19::chr17:20824400..20824414,+	p4@ENST00000443508
1.63e-15	FFCP PHASE2:Hg19::chr5:172901990..172901996,+	p@chr5:172901990..172901996, +
1.63e-15	FFCP PHASE1:Hg19::chr5:172901990..172901996,+	p@chr5:172901990..172901996, +
1.08e-14	FFCP PHASE2:Hg19::chr17:38698622..38698655,-	p@chr17:38698622..38698655, -
1.08e-14	FFCP PHASE1:Hg19::chr17:38698622..38698655,-	p@chr17:38698622..38698655, -
1.19e-14	FFCP PHASE1:Hg19::chr2:45233119..45233139,-	p@chr2:45233119..45233139, -
1.19e-14	FFCP PHASE2:Hg19::chr2:45233119..45233139,-	p@chr2:45233119..45233139, -
1.19e-14	FFCP PHASE2:Hg19::chr7:94060437..94060448,+	p@chr7:94060437..94060448, +
1.19e-14	FFCP PHASE1:Hg19::chr7:94060437..94060448,+	p@chr7:94060437..94060448, +
2.89e-14	FFCP PHASE2:Hg19::chr11:76381029..76381041,-	p6@LRRC32
2.89e-14	FFCP PHASE1:Hg19::chr11:76381029..76381041,-	p6@LRRC32
3.04e-14	FFCP PHASE1:Hg19::chr18:73967189..73967200,-	p@chr18:73967189..73967200, -
3.04e-14	FFCP PHASE2:Hg19::chr18:73967189..73967200,-	p@chr18:73967189..73967200, -
3.25e-14	FFCP PHASE1:Hg19::chr4:8296194..8296199,+	p@chr4:8296194..8296199, +
3.25e-14	FFCP PHASE2:Hg19::chr4:8296194..8296199,+	p@chr4:8296194..8296199, +
1.66e-13	FFCP PHASE2:Hg19::chr22:43042955..43042964,-	p23@CYB5R3
1.66e-13	FFCP PHASE1:Hg19::chr22:43042955..43042964,-	p23@CYB5R3
1.9e-13	FFCP PHASE1:Hg19::chr4:111536708..111536738,-	p1@ENST00000513690
1.9e-13	FFCP PHASE2:Hg19::chr4:111536708..111536738,-	p1@ENST00000513690
3.14e-13	FFCP PHASE1:Hg19::chr4:1160761..1160774,-	p@chr4:1160761..1160774, -
3.14e-13	FFCP PHASE2:Hg19::chr4:1160761..1160774,-	p@chr4:1160761..1160774, -
3.49e-13	FFCP PHASE2:Hg19::chr1:246023985..246024006,-	p@chr1:246023985..246024006, -
3.49e-13	FFCP PHASE1:Hg19::chr1:246023985..246024006,-	p@chr1:246023985..246024006, -
3.61e-13	FFCP PHASE2:Hg19::chr11:46316699..46316719,+	p10@CREB3L1
3.61e-13	FFCP PHASE1:Hg19::chr11:46316699..46316719,+	p10@CREB3L1
4.81e-13	FFCP PHASE1:Hg19::chr5:59792105..59792117,-	p@chr5:59792105..59792117, -
4.81e-13	FFCP PHASE2:Hg19::chr5:59792105..59792117,-	p@chr5:59792105..59792117, -
5.76e-13	FFCP PHASE2:Hg19::chr6:72970377..72970387,+	p20@RIMS1
5.76e-13	FFCP PHASE1:Hg19::chr6:72970377..72970387,+	p20@RIMS1
8.38e-13	FFCP PHASE1:Hg19::chr4:111558118..111558133,-	p5@PITX2
8.38e-13	FFCP PHASE2:Hg19::chr4:111558118..111558133,-	p5@PITX2
2.19e-12	FFCP PHASE2:Hg19::chr4:114901128..114901136,-	p20@ARSJ
2.19e-12	FFCP PHASE1:Hg19::chr7:95979117..95979120,+	p@chr7:95979117..95979120, +
2.19e-12	FFCP PHASE1:Hg19::chr4:120446538..120446544,-	p@chr4:120446538..120446544, -
2.19e-12	FFCP PHASE2:Hg19::chr4:120446538..120446544,-	p@chr4:120446538..120446544, -
2.19e-12	FFCP PHASE1:Hg19::chr3:123522645..123522646,-	p@chr3:123522645..123522646, -
2.19e-12	FFCP PHASE2:Hg19::chr3:123522645..123522646,-	p@chr3:123522645..123522646, -
2.19e-12	FFCP PHASE2:Hg19::chr21:45467027..45467028,-	p1@H2AFZP1
2.19e-12	FFCP PHASE1:Hg19::chr21:45467027..45467028,-	p1@H2AFZP1
2.19e-12	FFCP PHASE1:Hg19::chr4:26862218..26862221,-	p2@ENST00000467484
2.19e-12	FFCP PHASE2:Hg19::chr7:95979117..95979120,+	p@chr7:95979117..95979120, +
2.19e-12	FFCP PHASE1:Hg19::chr4:114901128..114901136,-	p20@ARSJ
2.19e-12	FFCP PHASE2:Hg19::chr4:26862218..26862221,-	p2@ENST00000467484
2.45e-12	FFCP PHASE1:Hg19::chr11:10750725..10750729,-	p@chr11:10750725..10750729, -
2.45e-12	FFCP PHASE2:Hg19::chr7:101461135..101461143,+	p@chr7:101461135..101461143, +

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{CL
-|id=CL:0002569
+|alt_id=
-|name=mesenchymal stem cell of umbilical cord
-|namespace=cell
-|def="A mesenchymal stem cell of the umbilical cord." [GOC:tfm]
-|xref=
-|is_a=CL:0000134
-|synonym=
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=tmeehan
-|obo_creation_date=2011-03-01T09:55:12Z
+|def="A mesenchymal stem cell of the umbilical cord." [GOC:tfm]
-|subset=
-|adjacent_to=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=CL:0002569
+|is_a=CL:0000134 ;;CL:0000349
+|is_obsolete=
 |located_in=
+|name=mesenchymal stem cell of umbilical cord
+|namespace=FANTOM
+|obo_creation_date=2011-03-01T09:55:12Z
 |part_of=UBERON:0003422
-|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
-|is_obsolete=
 |preceded_by=
+|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
+|subset=
+|synonym=
+|union_of=
+|xref=
 }}

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Latest revision as of 16:44, 12 September 2014

Ontology Tree: Loaded from BioPortal

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