CL:0002600: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=smooth muscle cell of trachea | |name=smooth muscle cell of trachea | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-06T05:50:28Z | |obo_creation_date=2011-03-06T05:50:28Z | ||
|part_of=UBERON:0003126 | |part_of=UBERON:0003126 |
Latest revision as of 16:45, 12 September 2014
Name: | smooth muscle cell of trachea |
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Namespace: | FANTOM |
Definition: | "A smooth muscle cell of the trachea." [GOC:tfm] |
Created by: | tmeehan |
Creation date: | 2011-03-06T05:50:28Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000192(smooth muscle cell) |
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part_of: | UBERON:0003126(trachea) |
Children
derives from: | FF:0000184 (human smooth muscle cell of trachea sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
Mouse (Mus musculus)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002600 (smooth muscle cell of trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data