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CL:0002604: Difference between revisions

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|located_in=
|located_in=
|name=astrocyte of the hippocampus
|name=astrocyte of the hippocampus
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2011-03-06T06:57:33Z
|obo_creation_date=2011-03-06T06:57:33Z
|part_of=UBERON:0001954
|part_of=UBERON:0001954

Latest revision as of 16:45, 12 September 2014

Name:astrocyte of the hippocampus
Namespace:FANTOM
Created by:tmeehan
Creation date:2011-03-06T06:57:33Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0012000(astrocyte of the forebrain),CL:1001580(hippocampus glial cell)
part_of:UBERON:0001954(Ammon's horn)



Children


is a:FF:0000193 (astrocyte of the hippocampus)
derives from:FF:0000197 (mouse astrocyte of hippocampus sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002604 (astrocyte of the hippocampus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data