CL:0002677: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment=This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell. | |comment=This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell. | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A regulatory T cell that has not encountered antigen." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002677 | |||
|is_a=CL:0000792 ;;CL:0000898 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=naive regulatory T cell | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-08-25T03:17:21Z | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} |
Latest revision as of 16:46, 12 September 2014
Name: | naive regulatory T cell |
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Namespace: | FANTOM |
Definition: | "A regulatory T cell that has not encountered antigen." [GOC:tfm] |
Comments: | This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell. |
Created by: | tmeehan |
Creation date: | 2011-08-25T03:17:21Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000792(CD4-positive, CD25-positive, alpha-beta regulatory T cell),CL:0000898(naive T cell) |
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Children
is a: | FF:0011127 (CD4-positiveCD25-positiveCD45RA- naive regulatory T cells expanded),FF:11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1),FF:11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1) |
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derives from: | FF:0011128 (human CD4-positiveCD25-positiveCD45RA- naive regulatory T cells sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Mouse (Mus musculus)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002677 (naive regulatory T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data