CL:1000280: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A smooth muscle cell that is part of the colon." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:1000280 | |||
|is_a=CL:1000279 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=smooth muscle cell of colon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001155 | |part_of=UBERON:0001155 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="non-striated muscle fiber of colon" EXACT [FMA:15663] | ||
|union_of= | |||
|xref=FMA:15663 | |||
}} | }} |
Latest revision as of 16:46, 12 September 2014
Name: | smooth muscle cell of colon | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "A smooth muscle cell that is part of the colon." [GOC:tfm] | |
Xrefs: |
| |
Synonyms: | "non-striated muscle fiber of colon" EXACT [FMA:15663] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:1000279(smooth muscle cell of large intestine) |
---|---|
part_of: | UBERON:0001155(colon) |
Children
derives from: | FF:0000181 (human smooth muscle of colon sample) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
Mouse (Mus musculus)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000280 (smooth muscle cell of colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data