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CL:1000428: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=stem cell of epidermis
|name=stem cell of epidermis
|namespace=cell
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001003
|part_of=UBERON:0001003

Latest revision as of 16:46, 12 September 2014

Name:stem cell of epidermis
Namespace:FANTOM
Definition:"A somatic stem cell that is part of the epidermis." [GOC:tfm]
Xrefs:
links:
FMA:70541
Synonyms: "epidermal stem cell" EXACT [FMA:70541]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000723(somatic stem cell)
part_of:UBERON:0001003(skin epidermis)



Children


derives from:FF:0000071 (human hair follicle dermal papilla cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
  • 11348-117G7 (Hair Follicle Dermal Papilla Cells, donor2)
  • 11420-118F7 (Hair Follicle Dermal Papilla Cells, donor3)

Mouse (Mus musculus)

  • 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
  • 11348-117G7 (Hair Follicle Dermal Papilla Cells, donor2)
  • 11420-118F7 (Hair Follicle Dermal Papilla Cells, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000428 (stem cell of epidermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data