Personal tools

DOID:0050687: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:0050687
|alt_id=
|name=cell type cancer
|namespace=disease_ontology
|def="A cancer that is classified by the type of cell from which it is derived." [url:http\://cancerguide.org/basic.html, url:http\://en.wikipedia.org/wiki/Cancer]
|xref=
|is_a=DOID:162
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=snadendla
|created_by=snadendla
|obo_creation_date=2011-06-13T03:28:50Z
|def="A cancer that is classified by the type of cell from which it is derived." [url:http://cancerguide.org/basic.html, url:http://en.wikipedia.org/wiki/Cancer]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:0050687
|is_a=DOID:162
|is_obsolete=
|located_in=
|located_in=
|name=cell type cancer
|namespace=FANTOM
|obo_creation_date=2011-06-13T03:28:50Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:cell type cancer
Namespace:FANTOM
Definition:"A cancer that is classified by the type of cell from which it is derived." [url:http://cancerguide.org/basic.html, url:http://en.wikipedia.org/wiki/Cancer]
Created by:snadendla
Creation date:2011-06-13T03:28:50Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:162(cancer)



Children


is a:DOID:1115 (sarcoma),DOID:154 (mixed cell type cancer),DOID:1909 (melanoma),DOID:2994 (germ cell cancer),DOID:305 (carcinoma),DOID:3070 (malignant glioma),DOID:3350 (mesenchymal cell neoplasm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0050687 (cell type cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:0050687&oldid=3275599"