DOID:1749: Difference between revisions

Latest revision as of 16:49, 12 September 2014

squamous cell carcinoma

Namespace:

FANTOM

Definition:

"A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm]

Xrefs:

Expandlinks:

Synonyms:

"epidermoid carcinoma" EXACT [CSP2005:2000-3145]
"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971]
"squamous carcinoma" EXACT [NCI2004_11_17:C2929]
"squamous cell cancer" EXACT []
"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007]
"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001]
"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008]
"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]

Alt_id:

DOID:5512

Ontology association Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies. link to ontology dataset data

Parents

is_a:	DOID:305(carcinoma)

Children

is a:	DOID:4830 (adenosquamous carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
10426-106D3 (epidermoid carcinoma cell line:A431)
10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
10463-106H4 (squamous cell carcinoma cell line:EC-GI-10)
10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
10512-107D8
10532-107G1

... further results Mouse (Mus musculus)

10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
10426-106D3 (epidermoid carcinoma cell line:A431)
10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
10463-106H4 (squamous cell carcinoma cell line:EC-GI-10)
10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
10512-107D8
10532-107G1

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1749 (squamous cell carcinoma), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Show entries

Search:

P-value	FFCP	Short description
1.52e-75	FFCP PHASE1:Hg19::chr1:209944599..209944616,-	p@chr1:209944599..209944616, -
1.52e-75	FFCP PHASE2:Hg19::chr1:209944599..209944616,-	p@chr1:209944599..209944616, -
2.65e-72	FFCP PHASE1:Hg19::chr11:70245655..70245668,-	p@chr11:70245655..70245668, -
2.65e-72	FFCP PHASE2:Hg19::chr11:70245655..70245668,-	p@chr11:70245655..70245668, -
2.04e-63	FFCP PHASE2:Hg19::chr1:55436540..55436544,-	p@chr1:55436540..55436544, -
2.04e-63	FFCP PHASE1:Hg19::chr1:55436540..55436544,-	p@chr1:55436540..55436544, -
3.14e-63	FFCP PHASE2:Hg19::chr7:55053327..55053342,+	p@chr7:55053327..55053342, +
3.14e-63	FFCP PHASE1:Hg19::chr7:55053327..55053342,+	p@chr7:55053327..55053342, +
8.34e-63	FFCP PHASE1:Hg19::chr3:151034414..151034434,-	p2@GPR87
8.34e-63	FFCP PHASE2:Hg19::chr3:151034414..151034434,-	p2@GPR87
1.33e-60	FFCP PHASE2:Hg19::chr6:19418214..19418218,-	p@chr6:19418214..19418218, -
1.33e-60	FFCP PHASE1:Hg19::chr6:19418214..19418218,-	p@chr6:19418214..19418218, -
4.0e-57	FFCP PHASE2:Hg19::chr1:209945462..209945477,-	p@chr1:209945462..209945477, -
4.0e-57	FFCP PHASE1:Hg19::chr1:209945462..209945477,-	p@chr1:209945462..209945477, -
4.38e-56	FFCP PHASE2:Hg19::chr7:55053266..55053282,+	p@chr7:55053266..55053282, +
4.38e-56	FFCP PHASE1:Hg19::chr7:55053266..55053282,+	p@chr7:55053266..55053282, +
4.21e-53	FFCP PHASE2:Hg19::chr1:153530641..153530645,-	p@chr1:153530641..153530645, -
4.21e-53	FFCP PHASE1:Hg19::chr1:153530641..153530645,-	p@chr1:153530641..153530645, -
5.73e-53	FFCP PHASE1:Hg19::chr21:38631055..38631068,-	p@chr21:38631055..38631068, -
5.73e-53	FFCP PHASE2:Hg19::chr21:38631055..38631068,-	p@chr21:38631055..38631068, -
1.69e-50	FFCP PHASE1:Hg19::chr8:126044339..126044344,-	p@chr8:126044339..126044344, -
1.69e-50	FFCP PHASE2:Hg19::chr8:126044339..126044344,-	p@chr8:126044339..126044344, -
2.43e-49	FFCP PHASE2:Hg19::chr17:39755734..39755747,-	p@chr17:39755734..39755747, -
2.43e-49	FFCP PHASE1:Hg19::chr17:39755734..39755747,-	p@chr17:39755734..39755747, -
2.53e-46	FFCP PHASE1:Hg19::chr10:54215029..54215039,-	p5@ENST00000435813, p5@uc001jjs.2
2.53e-46	FFCP PHASE2:Hg19::chr10:54215029..54215039,-	p5@ENST00000435813, p5@uc001jjs.2
1.76e-45	FFCP PHASE2:Hg19::chr17:39675950..39675974,-	p@chr17:39675950..39675974, -
1.76e-45	FFCP PHASE1:Hg19::chr18:61586483..61586487,+	p@chr18:61586483..61586487, +
1.76e-45	FFCP PHASE1:Hg19::chr17:39675950..39675974,-	p@chr17:39675950..39675974, -
1.76e-45	FFCP PHASE2:Hg19::chr18:61586483..61586487,+	p@chr18:61586483..61586487, +
4.38e-44	FFCP PHASE1:Hg19::chr3:153697368..153697372,+	p@chr3:153697368..153697372, +
4.38e-44	FFCP PHASE2:Hg19::chr3:153697368..153697372,+	p@chr3:153697368..153697372, +
1.27e-43	FFCP PHASE1:Hg19::chr19:51523412..51523427,-	p2@KLK10
1.27e-43	FFCP PHASE2:Hg19::chr19:51523412..51523427,-	p2@KLK10
4.85e-43	FFCP PHASE1:Hg19::chr17:39675882..39675894,-	p@chr17:39675882..39675894, -
4.85e-43	FFCP PHASE1:Hg19::chrX:15683147..15683159,-	p3@TMEM27
4.85e-43	FFCP PHASE1:Hg19::chr7:55053219..55053226,+	p@chr7:55053219..55053226, +
4.85e-43	FFCP PHASE2:Hg19::chr17:39675882..39675894,-	p@chr17:39675882..39675894, -
4.85e-43	FFCP PHASE2:Hg19::chrX:15683147..15683159,-	p3@TMEM27
4.85e-43	FFCP PHASE2:Hg19::chr7:55053219..55053226,+	p@chr7:55053219..55053226, +
1.42e-40	FFCP PHASE2:Hg19::chr13:74071880..74071894,+	p@chr13:74071880..74071894, +
1.42e-40	FFCP PHASE1:Hg19::chr13:74071880..74071894,+	p@chr13:74071880..74071894, +
1.5e-40	FFCP PHASE1:Hg19::chr5:150998590..150998611,-	p@chr5:150998590..150998611, -
1.5e-40	FFCP PHASE2:Hg19::chr5:150998590..150998611,-	p@chr5:150998590..150998611, -
2.02e-40	FFCP PHASE1:Hg19::chrX:41765898..41765915,-	p@chrX:41765898..41765915, -
2.02e-40	FFCP PHASE2:Hg19::chrX:41765898..41765915,-	p@chrX:41765898..41765915, -
6.43e-40	FFCP PHASE2:Hg19::chr20:30153874..30153891,+	p8@HM13
6.43e-40	FFCP PHASE1:Hg19::chr20:30153874..30153891,+	p8@HM13
2.28e-39	FFCP PHASE1:Hg19::chr17:72940334..72940358,+	p@chr17:72940334..72940358, +
2.28e-39	FFCP PHASE2:Hg19::chr17:72940334..72940358,+	p@chr17:72940334..72940358, +
2.41e-39	FFCP PHASE1:Hg19::chr10:54259403..54259416,+	p@chr10:54259403..54259416, +
2.41e-39	FFCP PHASE2:Hg19::chr10:54259403..54259416,+	p@chr10:54259403..54259416, +
4.5e-38	FFCP PHASE1:Hg19::chr7:55053540..55053550,+	p@chr7:55053540..55053550, +
4.5e-38	FFCP PHASE2:Hg19::chr7:55053540..55053550,+	p@chr7:55053540..55053550, +
2.13e-37	FFCP PHASE1:Hg19::chr11:57558934..57558956,+	p8@CTNND1
2.13e-37	FFCP PHASE2:Hg19::chr11:57558934..57558956,+	p8@CTNND1
1.18e-36	FFCP PHASE2:Hg19::chr12:20975224..20975226,-	p@chr12:20975224..20975226, -
1.18e-36	FFCP PHASE1:Hg19::chr12:20975224..20975226,-	p@chr12:20975224..20975226, -
2.27e-36	FFCP PHASE1:Hg19::chr20:52784969..52785020,+	p@chr20:52784969..52785020, +
2.27e-36	FFCP PHASE2:Hg19::chr20:52784969..52785020,+	p@chr20:52784969..52785020, +
2.56e-36	FFCP PHASE1:Hg19::chr5:39255776..39255791,+	p@chr5:39255776..39255791, +
2.56e-36	FFCP PHASE1:Hg19::chr17:39678090..39678101,-	p4@KRT15
2.56e-36	FFCP PHASE2:Hg19::chr5:39255776..39255791,+	p@chr5:39255776..39255791, +
2.56e-36	FFCP PHASE2:Hg19::chr17:39678090..39678101,-	p4@KRT15
3.32e-36	FFCP PHASE1:Hg19::chr2:31607762..31607771,-	p@chr2:31607762..31607771, -
3.32e-36	FFCP PHASE2:Hg19::chr2:31607762..31607771,-	p@chr2:31607762..31607771, -
1.21e-35	FFCP PHASE2:Hg19::chr9:114557207..114557230,-	p1@C9orf84
1.21e-35	FFCP PHASE1:Hg19::chr9:114557207..114557230,-	p1@C9orf84
1.94e-35	FFCP PHASE2:Hg19::chr9:114490545..114490560,-	p@chr9:114490545..114490560, -
1.94e-35	FFCP PHASE1:Hg19::chr9:114490545..114490560,-	p@chr9:114490545..114490560, -
7.61e-35	FFCP PHASE1:Hg19::chr7:20257377..20257401,+	p@chr7:20257377..20257401, +
7.61e-35	FFCP PHASE2:Hg19::chr7:20257377..20257401,+	p@chr7:20257377..20257401, +
8.78e-35	FFCP PHASE2:Hg19::chr8:128306991..128307011,-	p@chr8:128306991..128307011, -
8.78e-35	FFCP PHASE1:Hg19::chr8:128306991..128307011,-	p@chr8:128306991..128307011, -
1.37e-34	FFCP PHASE2:Hg19::chr20:10400400..10400411,-	p@chr20:10400400..10400411, -
1.37e-34	FFCP PHASE1:Hg19::chr20:10400400..10400411,-	p@chr20:10400400..10400411, -
2.01e-34	FFCP PHASE1:Hg19::chr14:51955719..51955733,+	p15@FRMD6
2.01e-34	FFCP PHASE2:Hg19::chr14:51955719..51955733,+	p15@FRMD6
2.93e-34	FFCP PHASE2:Hg19::chr11:393795..393799,-	p@chr11:393795..393799, -
2.93e-34	FFCP PHASE1:Hg19::chr11:393795..393799,-	p@chr11:393795..393799, -
5.36e-34	FFCP PHASE2:Hg19::chr6:10413321..10413336,+	p@chr6:10413321..10413336, +
5.36e-34	FFCP PHASE1:Hg19::chr6:10413321..10413336,+	p@chr6:10413321..10413336, +
5.82e-34	FFCP PHASE2:Hg19::chr1:115212619..115212636,-	p2@DENND2C
5.82e-34	FFCP PHASE1:Hg19::chr1:115212619..115212636,-	p2@DENND2C
6.3e-34	FFCP PHASE1:Hg19::chr10:105796014..105796053,-	p@chr10:105796014..105796053, -
6.3e-34	FFCP PHASE2:Hg19::chr10:105796014..105796053,-	p@chr10:105796014..105796053, -
8.11e-34	FFCP PHASE1:Hg19::chr11:57558973..57558988,+	p11@CTNND1
8.11e-34	FFCP PHASE2:Hg19::chr11:57558973..57558988,+	p11@CTNND1
1.5e-33	FFCP PHASE1:Hg19::chr6:43423785..43423800,-	p3@DLK2
1.5e-33	FFCP PHASE2:Hg19::chr6:43423785..43423800,-	p3@DLK2
7.55e-33	FFCP PHASE1:Hg19::chr15:79296820..79296829,-	p@chr15:79296820..79296829, -
7.55e-33	FFCP PHASE2:Hg19::chr15:79296820..79296829,-	p@chr15:79296820..79296829, -
1.14e-32	FFCP PHASE2:Hg19::chr12:47628434..47628438,+	p1@CU678929
1.14e-32	FFCP PHASE1:Hg19::chr12:47628434..47628438,+	p1@CU678929
1.46e-32	FFCP PHASE1:Hg19::chr12:52525577..52525579,-	p@chr12:52525577..52525579, -
1.46e-32	FFCP PHASE2:Hg19::chr20:10750941..10750951,+	p@chr20:10750941..10750951, +
1.46e-32	FFCP PHASE1:Hg19::chr20:10750941..10750951,+	p@chr20:10750941..10750951, +
1.46e-32	FFCP PHASE1:Hg19::chr17:76628163..76628174,-	p@chr17:76628163..76628174, -
1.46e-32	FFCP PHASE2:Hg19::chr12:52525577..52525579,-	p@chr12:52525577..52525579, -
1.46e-32	FFCP PHASE2:Hg19::chr17:76628163..76628174,-	p@chr17:76628163..76628174, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{DOID
-|id=DOID:1749
+|alt_id=DOID:5512
-|name=squamous cell carcinoma
-|namespace=
-|def="A carcinoma that derives_from squamous epithelial cells." [url:http\://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http\://www.medicinenet.com/skin_cancer/page2.htm]
-|xref=
-|is_a=DOID:305
-|synonym="epidermoid carcinoma" EXACT [CSP2005:2000-3145];;"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971];;"squamous carcinoma" EXACT [NCI2004_11_17:C2929];;"squamous cell cancer" EXACT [];;"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007];;"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001];;"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008];;"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]
 |comment=
-|alt_id=DOID:5512
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm]
-|subset=
-|adjacent_to=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=DOID:1749
+|is_a=DOID:305
+|is_obsolete=
 |located_in=
+|name=squamous cell carcinoma
+|namespace=FANTOM
+|obo_creation_date=
 |part_of=
+|preceded_by=
+|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
+|subset=
+|synonym="epidermoid carcinoma" EXACT [CSP2005:2000-3145];;"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971];;"squamous carcinoma" EXACT [NCI2004_11_17:C2929];;"squamous cell cancer" EXACT [];;"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007];;"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001];;"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008];;"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]
+|union_of=
+|xref=MSH:D002294;;NCI:C2929;;SNOMEDCT_2010_1_31:154605007;;SNOMEDCT_2010_1_31:189566008;;SNOMEDCT_2010_1_31:28899001;;SNOMEDCT_2010_1_31:402815007;;UMLS_CUI:C0007137;;UMLS_CUI:C0751688
 }}

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DOID:1749: Difference between revisions

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Latest revision as of 16:49, 12 September 2014

Ontology Tree: Loaded from BioPortal

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