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{{DOID
{{DOID
|id=DOID:1909
|alt_id=
|name=melanoma
|namespace=disease_ontology
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma]
|xref=MSH:D008545;;NCI:C3224;;SNOMEDCT_2010_1_31:154501005;;SNOMEDCT_2010_1_31:189749008;;SNOMEDCT_2010_1_31:2092003;;SNOMEDCT_2010_1_31:269503007;;SNOMEDCT_2010_1_31:269577007;;SNOMEDCT_2010_1_31:372244006;;UMLS_CUI:C0025202
|is_a=DOID:0050687
|synonym="malignant melanoma" EXACT [NCI2004_11_17:C3224];;"malignant melanoma" EXACT [MTH:475];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005];;"malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006];;"malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007];;"malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003];;"melanoma" EXACT [CSP2005:2020-2434];;"melanoma" EXACT [MTH:NOCODE];;"Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:1909
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=melanoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="malignant melanoma" EXACT [NCI2004_11_17:C3224];;"malignant melanoma" EXACT [MTH:475];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007];;"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005];;"malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006];;"malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007];;"malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003];;"melanoma" EXACT [CSP2005:2020-2434];;"melanoma" EXACT [MTH:NOCODE];;"Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008]
|union_of=
|xref=MSH:D008545;;NCI:C3224;;SNOMEDCT_2010_1_31:154501005;;SNOMEDCT_2010_1_31:189749008;;SNOMEDCT_2010_1_31:2092003;;SNOMEDCT_2010_1_31:269503007;;SNOMEDCT_2010_1_31:269577007;;SNOMEDCT_2010_1_31:372244006;;UMLS_CUI:C0025202
}}
}}

Latest revision as of 16:49, 12 September 2014

Name:melanoma
Namespace:FANTOM
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma]
Xrefs:
links:

MSH:D008545
NCI:C3224
SNOMEDCT_2010_1_31:154501005
SNOMEDCT_2010_1_31:189749008
SNOMEDCT_2010_1_31:2092003
SNOMEDCT_2010_1_31:269503007
SNOMEDCT_2010_1_31:269577007
SNOMEDCT_2010_1_31:372244006

UMLS_CUI:C0025202
Synonyms: "malignant melanoma" EXACT [NCI2004_11_17:C3224]
"malignant melanoma" EXACT [MTH:475]
"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007]
"malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005]
"malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006]
"malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007]
"malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003]
"melanoma" EXACT [CSP2005:2020-2434]
"melanoma" EXACT [MTH:NOCODE]
"Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:0050687(cell type cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1909 (melanoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data