Personal tools

DOID:2394: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{DOID |id=DOID:2394 |name=ovarian cancer |namespace= |def= |xref= |is_a=DOID:120 |synonym="malignant Ovarian tumor" EXACT [NCI2004_11_17:C7431];;"malignant tumor of ov...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:2394
|name=ovarian cancer
|namespace=
|def=
|xref=
|is_a=DOID:120
|synonym="malignant Ovarian tumor" EXACT [NCI2004_11_17:C7431];;"malignant tumor of ovary (disorder)" EXACT [SNOMEDCT_2005_07_31:363443007];;"malignant tumour of ovary" EXACT [SNOMEDCT_2005_07_31:154528000];;"neoplasm of ovary (disorder)" EXACT [SNOMEDCT_2005_07_31:123843001];;"ovarian cancer" EXACT [CSP2005:2016-1387];;"ovarian neoplasm" EXACT [MTH:NOCODE];;"ovary cancer" EXACT [];;"ovary neoplasm" EXACT [CSP2005:2016-1387];;"primary malignant neoplasm of ovary and other uterine adnexa (disorder)" EXACT [SNOMEDCT_2005_07_31:372117006];;"primary ovarian cancer" EXACT [];;"tumor of the Ovary" EXACT [NCI2004_11_17:C4984]
|comment=
|alt_id=DOID:0060070;;DOID:2144;;DOID:9595
|alt_id=DOID:0060070;;DOID:2144;;DOID:9595
|disjoint_from=
|comment=OMIM mapping confirmed by DO. [SN].
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:2394
|is_a=DOID:120
|is_obsolete=
|located_in=
|located_in=
|name=ovarian cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="malignant Ovarian tumor" EXACT [NCI2004_11_17:C7431];;"malignant tumor of ovary (disorder)" EXACT [SNOMEDCT_2005_07_31:363443007];;"malignant tumour of ovary" EXACT [SNOMEDCT_2005_07_31:154528000];;"neoplasm of ovary (disorder)" EXACT [SNOMEDCT_2005_07_31:123843001];;"ovarian cancer" EXACT [CSP2005:2016-1387];;"ovarian neoplasm" EXACT [MTH:NOCODE];;"ovary cancer" EXACT [];;"ovary neoplasm" EXACT [CSP2005:2016-1387];;"primary malignant neoplasm of ovary and other uterine adnexa (disorder)" EXACT [SNOMEDCT_2005_07_31:372117006];;"primary ovarian cancer" EXACT [];;"tumor of the Ovary" EXACT [NCI2004_11_17:C4984]
|union_of=
|xref=MSH:D010051;;NCI:C4984;;OMIM:167000;;SNOMEDCT_2010_1_31:123843001;;SNOMEDCT_2010_1_31:154528000;;SNOMEDCT_2010_1_31:363443007;;SNOMEDCT_2010_1_31:372117006;;SNOMEDCT_2010_1_31:93934004;;UMLS_CUI:C0919267;;UMLS_CUI:C1140680;;UMLS_CUI:C1299247
}}
}}

Latest revision as of 16:49, 12 September 2014

Name:ovarian cancer
Namespace:FANTOM
Xrefs:
links:

MSH:D010051
NCI:C4984
OMIM:167000
SNOMEDCT_2010_1_31:123843001
SNOMEDCT_2010_1_31:154528000
SNOMEDCT_2010_1_31:363443007
SNOMEDCT_2010_1_31:372117006
SNOMEDCT_2010_1_31:93934004
UMLS_CUI:C0919267
UMLS_CUI:C1140680

UMLS_CUI:C1299247
Synonyms: "malignant Ovarian tumor" EXACT [NCI2004_11_17:C7431]
"malignant tumor of ovary (disorder)" EXACT [SNOMEDCT_2005_07_31:363443007]
"malignant tumour of ovary" EXACT [SNOMEDCT_2005_07_31:154528000]
"neoplasm of ovary (disorder)" EXACT [SNOMEDCT_2005_07_31:123843001]
"ovarian cancer" EXACT [CSP2005:2016-1387]
"ovarian neoplasm" EXACT [MTH:NOCODE]
"ovary cancer" EXACT []
"ovary neoplasm" EXACT [CSP2005:2016-1387]
"primary malignant neoplasm of ovary and other uterine adnexa (disorder)" EXACT [SNOMEDCT_2005_07_31:372117006]
"primary ovarian cancer" EXACT []
"tumor of the Ovary" EXACT [NCI2004_11_17:C4984]
Comments:OMIM mapping confirmed by DO. [SN].
Alt_id: DOID:0060070
DOID:2144
DOID:9595

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:120(female reproductive organ cancer)



Children


is a:DOID:2152 (ovary epithelial cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10687-109F3 (Krukenberg tumor cell line:HSKTC)
  • 10693-109F9 (serous cystadenocarcinoma cell line:HTOA)
  • 11756-123H1 (mesenchymal precursor cell - ovarian cancer left ovary, donor1)
  • 11757-123H2 (mesenchymal precursor cell - ovarian cancer right ovary, donor1)
  • 11758-123H3 (mesenchymal precursor cell - ovarian cancer metastasis, donor1)
  • 11759-123H4 (mesenchymal precursor cell - ovarian cancer right ovary, donor2)
  • 11760-123H5 (mesenchymal precursor cell - ovarian cancer left ovary, donor3)
  • 11761-123H6 (mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02))
  • 11762-123H7 (mesenchymal precursor cell - ovarian cancer metastasis, donor3)
  • 11833-124G6 (mesenchymal precursor cell - ovarian cancer left ovary, donor2)

... further results Mouse (Mus musculus)

  • 10687-109F3 (Krukenberg tumor cell line:HSKTC)
  • 10693-109F9 (serous cystadenocarcinoma cell line:HTOA)
  • 11756-123H1 (mesenchymal precursor cell - ovarian cancer left ovary, donor1)
  • 11757-123H2 (mesenchymal precursor cell - ovarian cancer right ovary, donor1)
  • 11758-123H3 (mesenchymal precursor cell - ovarian cancer metastasis, donor1)
  • 11759-123H4 (mesenchymal precursor cell - ovarian cancer right ovary, donor2)
  • 11760-123H5 (mesenchymal precursor cell - ovarian cancer left ovary, donor3)
  • 11761-123H6 (mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02))
  • 11762-123H7 (mesenchymal precursor cell - ovarian cancer metastasis, donor3)
  • 11833-124G6 (mesenchymal precursor cell - ovarian cancer left ovary, donor2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:2394 (ovarian cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data