Personal tools

UBERON:0000002: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000002
|alt_id=
|name=uterine cervix
|namespace=
|def="Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
|xref=BTO:0001421;;EFO:0000979;;EMAPA:29927;;EV:0100114;;FMA:17740;;GAID:376;;MA:0000392;;MAT:0000292;;MESH:A.05.360.319.679.256;;ncithesaurus:Cervix;;OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA;;SCTID:245494008;;VHOG:0001359
|is_a=UBERON:0001560;;UBERON:0005156
|synonym="canalis cervicis uteri" EXACT [FMA:17740, FMA:TA];;"cervical canal" EXACT [];;"cervical canal of uterus" EXACT [];;"cervix" EXACT [];;"cervix of uterus" EXACT [];;"cervix uteri" EXACT [EMAPA:29927];;"neck of uterus" EXACT [];;"uterine cervix" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000002
|is_a=UBERON:0001560 ;;UBERON:0005156 ;;UBERON:0014404
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=uterine cervix
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000995
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="canalis cervicis uteri" EXACT [FMA:17740, FMA:TA];;"cervical canal" EXACT [];;"cervical canal of uterus" EXACT [];;"cervix" EXACT [];;"cervix of uterus" EXACT [];;"cervix uteri" EXACT [EMAPA:29927];;"neck of uterus" EXACT [];;"uterine cervix" EXACT []
|union_of=
|xref=BTO:0001421;;EFO:0000979;;EMAPA:29927;;EV:0100114;;FMA:17740;;GAID:376;;MA:0000392;;MAT:0000292;;MESH:A.05.360.319.679.256;;ncithesaurus:Cervix;;OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA;;SCTID:245494008;;VHOG:0001359
}}
}}

Latest revision as of 17:03, 12 September 2014

Name:uterine cervix
Namespace:FANTOM
Definition:"Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
Xrefs:
links:

BTO:0001421
EFO:0000979
EMAPA:29927
EV:0100114
FMA:17740
GAID:376
MA:0000392
MAT:0000292
MESH:A.05.360.319.679.256
ncithesaurus:Cervix
OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA
SCTID:245494008

VHOG:0001359
Synonyms: "canalis cervicis uteri" EXACT [FMA:17740, FMA:TA]
"cervical canal" EXACT []
"cervical canal of uterus" EXACT []
"cervix" EXACT []
"cervix of uterus" EXACT []
"cervix uteri" EXACT [EMAPA:29927]
"neck of uterus" EXACT []
"uterine cervix" EXACT []
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001560(neck of organ),UBERON:0005156(reproductive structure),UBERON:0014404(female anatomical structure)
part_of:UBERON:0000995(uterus)



Children

derives from:FF:0010013 (human cervix - adult sample),FF:0101967 (cervical cancer cell line sample)
part of:CL:0002535 (epithelial cell of cervix),UBERON:0004801 (cervix epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000002 (uterine cervix), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.22e-44FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_b2a2616ddff441bad9b918b45b4f398ep5@TDRD9
1.22e-44FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_b2a2616ddff441bad9b918b45b4f398ep5@TDRD9
4.27e-34FFCP PHASE1:Hg19::chr8:22001308..22001310,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:22001308..22001310, -
4.27e-34FFCP PHASE1:Hg19::chr21:47588743..47588750,-#_cc22a477a7ea91c6fbd1f8a1c0272520p9@C21orf56
4.27e-34FFCP PHASE2:Hg19::chr8:121058540..121058543,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121058540..121058543, -
4.27e-34FFCP PHASE2:Hg19::chr19:16838056..16838070,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:16838056..16838070, +
4.27e-34FFCP PHASE2:Hg19::chr17:32314322..32314327,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:32314322..32314327, -
4.27e-34FFCP PHASE1:Hg19::chr11:2428348..2428358,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2428348..2428358, -
4.27e-34FFCP PHASE2:Hg19::chr20:21918384..21918387,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918384..21918387, +
4.27e-34FFCP PHASE1:Hg19::chr17:27892902..27892907,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:27892902..27892907, +
4.27e-34FFCP PHASE2:Hg19::chr2:182548440..182548448,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:182548440..182548448, -
4.27e-34FFCP PHASE2:Hg19::chr14:23465559..23465575,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr14:23465559..23465575, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918470..21918480,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918470..21918480, +
4.27e-34FFCP PHASE1:Hg19::chr1:153371709..153371712,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr1:153371709..153371712, -
4.27e-34FFCP PHASE1:Hg19::chr3:55205086..55205090,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr3:55205086..55205090, -
4.27e-34FFCP PHASE2:Hg19::chr3:185016843..185016846,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr3:185016843..185016846, +
4.27e-34FFCP PHASE2:Hg19::chr11:2436541..2436561,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436541..2436561, -
4.27e-34FFCP PHASE1:Hg19::chr12:131117194..131117202,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117194..131117202, -
4.27e-34FFCP PHASE2:Hg19::chr6:49467718..49467724,+#_cc22a477a7ea91c6fbd1f8a1c0272520p4@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr20:43727212..43727217,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:43727212..43727217, -
4.27e-34FFCP PHASE2:Hg19::chr8:41485217..41485222,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485217..41485222, -
4.27e-34FFCP PHASE1:Hg19::chr8:121056549..121056554,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121056549..121056554, -
4.27e-34FFCP PHASE2:Hg19::chr6:39290499..39290502,-#_cc22a477a7ea91c6fbd1f8a1c0272520p8@KCNK16
4.27e-34FFCP PHASE1:Hg19::chr8:41484957..41484961,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41484957..41484961, -
4.27e-34FFCP PHASE1:Hg19::chr7:127258190..127258201,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@PAX4
4.27e-34FFCP PHASE1:Hg19::chr6:152084876..152084885,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084876..152084885, +
4.27e-34FFCP PHASE2:Hg19::chr17:39150341..39150346,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@KRTAP3-3
4.27e-34FFCP PHASE1:Hg19::chr3:181432833..181432842,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr3:181432833..181432842, +
4.27e-34FFCP PHASE1:Hg19::chr11:2436082..2436085,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436082..2436085, -
4.27e-34FFCP PHASE1:Hg19::chr20:43726566..43726571,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:43726566..43726571, +
4.27e-34FFCP PHASE2:Hg19::chr20:22449463..22449467,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:22449463..22449467, -
4.27e-34FFCP PHASE1:Hg19::chr17:32314322..32314327,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:32314322..32314327, -
4.27e-34FFCP PHASE1:Hg19::chr10:62029969..62029974,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:62029969..62029974, -
4.27e-34FFCP PHASE2:Hg19::chr8:121054330..121054333,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121054330..121054333, -
4.27e-34FFCP PHASE2:Hg19::chr17:27892922..27892925,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:27892922..27892925, +
4.27e-34FFCP PHASE2:Hg19::chr12:14849447..14849450,-#_cc22a477a7ea91c6fbd1f8a1c0272520p7@GUCY2C
4.27e-34FFCP PHASE1:Hg19::chr1:207193762..207193766,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr1:207193762..207193766, +
4.27e-34FFCP PHASE1:Hg19::chr19:16838056..16838070,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:16838056..16838070, +
4.27e-34FFCP PHASE2:Hg19::chr12:131117116..131117123,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117116..131117123, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918384..21918387,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918384..21918387, +
4.27e-34FFCP PHASE2:Hg19::chr8:41508626..41508633,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41508626..41508633, +
4.27e-34FFCP PHASE1:Hg19::chr5:160356414..160356417,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr5:160356414..160356417, -
4.27e-34FFCP PHASE2:Hg19::chr6:20705180..20705181,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:20705180..20705181, +
4.27e-34FFCP PHASE2:Hg19::chr6:49467576..49467583,+#_cc22a477a7ea91c6fbd1f8a1c0272520p5@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr8:41485217..41485222,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485217..41485222, -
4.27e-34FFCP PHASE1:Hg19::chr10:99550654..99550658,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:99550654..99550658, -
4.27e-34FFCP PHASE2:Hg19::chr4:148401920..148401930,+#_cc22a477a7ea91c6fbd1f8a1c0272520p7@EDNRA
4.27e-34FFCP PHASE2:Hg19::chr17:78152310..78152314,+#_cc22a477a7ea91c6fbd1f8a1c0272520p10@CARD14
4.27e-34FFCP PHASE2:Hg19::chr8:41485005..41485017,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485005..41485017, -
4.27e-34FFCP PHASE2:Hg19::chr7:127260123..127260165,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr7:127260123..127260165, +
4.27e-34FFCP PHASE2:Hg19::chr2:933356..933367,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:933356..933367, -
4.27e-34FFCP PHASE2:Hg19::chr22:32555214..32555221,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@C22orf42
4.27e-34FFCP PHASE1:Hg19::chr3:185016843..185016846,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr3:185016843..185016846, +
4.27e-34FFCP PHASE2:Hg19::chr6:152084890..152084896,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084890..152084896, +
4.27e-34FFCP PHASE1:Hg19::chr6:49467718..49467724,+#_cc22a477a7ea91c6fbd1f8a1c0272520p4@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr20:43727212..43727217,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:43727212..43727217, -
4.27e-34FFCP PHASE1:Hg19::chr17:39150341..39150346,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@KRTAP3-3
4.27e-34FFCP PHASE2:Hg19::chr8:121062548..121062551,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121062548..121062551, -
4.27e-34FFCP PHASE2:Hg19::chr17:32314379..32314387,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:32314379..32314387, -
4.27e-34FFCP PHASE1:Hg19::chr6:39290499..39290502,-#_cc22a477a7ea91c6fbd1f8a1c0272520p8@KCNK16
4.27e-34FFCP PHASE2:Hg19::chr20:21918392..21918404,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918392..21918404, +
4.27e-34FFCP PHASE1:Hg19::chr17:27892922..27892925,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:27892922..27892925, +
4.27e-34FFCP PHASE2:Hg19::chr3:4810204..4810210,+#_cc22a477a7ea91c6fbd1f8a1c0272520p34@ITPR1
4.27e-34FFCP PHASE2:Hg19::chr2:182548451..182548457,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:182548451..182548457, -
4.27e-34FFCP PHASE1:Hg19::chr20:22449463..22449467,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:22449463..22449467, -
4.27e-34FFCP PHASE1:Hg19::chr10:18689637..18689645,+#_cc22a477a7ea91c6fbd1f8a1c0272520p28@CACNB2
4.27e-34FFCP PHASE2:Hg19::chr11:2439293..2439304,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2439293..2439304, -
4.27e-34FFCP PHASE1:Hg19::chr8:41508626..41508633,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41508626..41508633, +
4.27e-34FFCP PHASE1:Hg19::chr6:20705180..20705181,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:20705180..20705181, +
4.27e-34FFCP PHASE2:Hg19::chr8:41486855..41486866,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41486855..41486866, -
4.27e-34FFCP PHASE1:Hg19::chr8:121058540..121058543,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121058540..121058543, -
4.27e-34FFCP PHASE1:Hg19::chr4:148401920..148401930,+#_cc22a477a7ea91c6fbd1f8a1c0272520p7@EDNRA
4.27e-34FFCP PHASE2:Hg19::chr5:170105957..170105992,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr5:170105957..170105992, -
4.27e-34FFCP PHASE1:Hg19::chr8:41485005..41485017,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485005..41485017, -
4.27e-34FFCP PHASE1:Hg19::chr7:127260123..127260165,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr7:127260123..127260165, +
4.27e-34FFCP PHASE1:Hg19::chr2:933356..933367,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:933356..933367, -
4.27e-34FFCP PHASE1:Hg19::chr22:32555214..32555221,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@C22orf42
4.27e-34FFCP PHASE2:Hg19::chr9:91077381..91077392,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr9:91077381..91077392, +
4.27e-34FFCP PHASE1:Hg19::chr6:152084890..152084896,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084890..152084896, +
4.27e-34FFCP PHASE2:Hg19::chr10:62030063..62030071,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:62030063..62030071, -
4.27e-34FFCP PHASE1:Hg19::chr11:2436541..2436561,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436541..2436561, -
4.27e-34FFCP PHASE2:Hg19::chr19:7184762..7184771,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:7184762..7184771, -
4.27e-34FFCP PHASE1:Hg19::chr6:49467576..49467583,+#_cc22a477a7ea91c6fbd1f8a1c0272520p5@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr2:182548440..182548448,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:182548440..182548448, -
4.27e-34FFCP PHASE2:Hg19::chr3:180892861..180892862,+#_cc22a477a7ea91c6fbd1f8a1c0272520p31@SOX2-OT
4.27e-34FFCP PHASE2:Hg19::chr2:165706192..165706200,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:165706192..165706200, +
4.27e-34FFCP PHASE1:Hg19::chr17:32314379..32314387,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:32314379..32314387, -
4.27e-34FFCP PHASE2:Hg19::chr8:121056304..121056311,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121056304..121056311, -
4.27e-34FFCP PHASE1:Hg19::chr14:93389079..93389083,+#_cc22a477a7ea91c6fbd1f8a1c0272520p24@CHGA
4.27e-34FFCP PHASE2:Hg19::chr17:27892945..27892952,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:27892945..27892952, +
4.27e-34FFCP PHASE1:Hg19::chr16:15596148..15596153,+#_cc22a477a7ea91c6fbd1f8a1c0272520p7@C16orf45
4.27e-34FFCP PHASE2:Hg19::chr2:182546258..182546267,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:182546258..182546267, +
4.27e-34FFCP PHASE2:Hg19::chr17:39755914..39755961,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:39755914..39755961, -
4.27e-34FFCP PHASE1:Hg19::chr12:14849447..14849450,-#_cc22a477a7ea91c6fbd1f8a1c0272520p7@GUCY2C
4.27e-34FFCP PHASE2:Hg19::chr4:22737597..22737604,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr4:22737597..22737604, +
4.27e-34FFCP PHASE2:Hg19::chr12:131117129..131117135,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117129..131117135, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918392..21918404,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918392..21918404, +
4.27e-34FFCP PHASE2:Hg19::chr22:44569031..44569036,+#_cc22a477a7ea91c6fbd1f8a1c0272520p27@PARVG
4.27e-34FFCP PHASE1:Hg19::chr3:4810204..4810210,+#_cc22a477a7ea91c6fbd1f8a1c0272520p34@ITPR1
4.27e-34FFCP PHASE2:Hg19::chr11:2436019..2436030,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436019..2436030, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000002&oldid=3277026"