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{{UBERON
{{UBERON
|id=UBERON:0000014
|alt_id=
|name=zone of skin
|namespace=
|def="A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
|xref=EHDAA2:0001844;;EHDAA:6530;;EV:0100152;;FMA:86166;;GAID:933;;http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MA:0000151;;MAT:0000284;;MESH:A.17.815;;MIAA:0000284;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:20795001;;VHOG:0000860
|is_a=UBERON:0000064
|synonym="portion of skin" EXACT [];;"region of skin" EXACT [];;"skin" EXACT [MA:0000151];;"skin region" EXACT [];;"skin zone" EXACT []
|comment=we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
|comment=we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000014
|is_a=UBERON:0000064 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=zone of skin
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002097
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="portion of skin" EXACT [];;"region of skin" EXACT [];;"skin" EXACT [MA:0000151];;"skin region" EXACT [];;"skin zone" EXACT []
|union_of=
|xref=EHDAA2:0001844;;EHDAA:6530;;EV:0100152;;FMA:86166;;GAID:933;;http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MA:0000151;;MAT:0000284;;MESH:A.17.815;;MIAA:0000284;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:20795001;;VHOG:0000860
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:zone of skin
Namespace:FANTOM
Definition:"A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
Xrefs:
links:

EHDAA2:0001844
EHDAA:6530
EV:0100152
FMA:86166
GAID:933
[1]
[ 200px-Skin.svg.png 200px-Skin.svg.png]
MA:0000151
MAT:0000284
MESH:A.17.815
MIAA:0000284
OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
SCTID:20795001

VHOG:0000860
Synonyms: "portion of skin" EXACT []
"region of skin" EXACT []
"skin" EXACT [MA:0000151]
"skin region" EXACT []
"skin zone" EXACT []
Comments:we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0002097(skin of body)



Children

is a:UBERON:0001419 (skin of limb),FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0103765 (dermatofibroma cell line),FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T),FF:10713-109I2 (),FF:10791-110H8 (keratoacanthoma cell line:HKA-1)
derives from:FF:0010065 (human skin - fetal sample),FF:0010074 (human skin - adult sample),FF:0011308 (mouse skin- adult sample),FF:0011397 (mouse skin- neonate N00 sample),FF:0011400 (mouse skin- neonate N03 sample),FF:0011406 (mouse skin- neonate N06 sample),FF:0011421 (mouse skin- neonate N10 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000014 (zone of skin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.4e-86FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_3815306e404cc02768d638d2ad371b97p1@Skint11
1.4e-86FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_3815306e404cc02768d638d2ad371b97p1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_3815306e404cc02768d638d2ad371b97p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_3815306e404cc02768d638d2ad371b97p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_3815306e404cc02768d638d2ad371b97p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_3815306e404cc02768d638d2ad371b97p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_3815306e404cc02768d638d2ad371b97p2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_3815306e404cc02768d638d2ad371b97p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_3815306e404cc02768d638d2ad371b97p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_3815306e404cc02768d638d2ad371b97p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_3815306e404cc02768d638d2ad371b97p1@Skint11
1.4e-86FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_3815306e404cc02768d638d2ad371b97p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_3815306e404cc02768d638d2ad371b97p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_3815306e404cc02768d638d2ad371b97p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_3815306e404cc02768d638d2ad371b97p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_3815306e404cc02768d638d2ad371b97p1@Krt74
1.4e-86FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_3815306e404cc02768d638d2ad371b97p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_3815306e404cc02768d638d2ad371b97p2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_3815306e404cc02768d638d2ad371b97p2@Dlx3
1.4e-86FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_3815306e404cc02768d638d2ad371b97p@chr11:99227413..99227429, -
1.07e-72FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_8adb6cd5cf4b280d09cce420750d0e5bp6@Mfsd4
1.07e-72FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr3:90343597..90343613, +
1.07e-72FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_8adb6cd5cf4b280d09cce420750d0e5bp1@Pnpla5
1.07e-72FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_8adb6cd5cf4b280d09cce420750d0e5bp6@Mfsd4
1.07e-72FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr3:90343597..90343613, +
1.07e-72FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_8adb6cd5cf4b280d09cce420750d0e5bp1@Pnpla5
1.07e-72FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:97432305..97432311, +
1.5e-72FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:97778311..97778326, +
1.5e-72FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Actbl2
1.5e-72FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:97778311..97778326, +
1.5e-72FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp25@Myo10
1.5e-72FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:43724117..43724131, -
1.5e-72FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:43724117..43724131, -
1.5e-72FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:66991117..66991146, +
1.5e-72FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:66991117..66991146, +
1.5e-72FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Actbl2
2.1e-72FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_93c2ce2883610c70219af0064a8c6bb4p@chr7:117436977..117436981, -
2.1e-72FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_93c2ce2883610c70219af0064a8c6bb4p6@Zdhhc21
2.1e-72FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_93c2ce2883610c70219af0064a8c6bb4p@chr4:111707315..111707319, +
2.1e-72FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_93c2ce2883610c70219af0064a8c6bb4p@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_93c2ce2883610c70219af0064a8c6bb4p@chr7:117436977..117436981, -
2.1e-72FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_93c2ce2883610c70219af0064a8c6bb4p@chr1:89485356..89485361, +
2.1e-72FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_93c2ce2883610c70219af0064a8c6bb4p@chr4:111707315..111707319, +
2.1e-72FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_93c2ce2883610c70219af0064a8c6bb4p6@Zdhhc21
4.13e-72FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_87f484d437a2cfb1c620866f9472d28fp1@Skint5
4.13e-72FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_87f484d437a2cfb1c620866f9472d28fp1@Skint5
1.65e-69FFCP PHASE2:Mm9::chr1:53971472..53971483,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr1:53971472..53971483, -
1.65e-69FFCP PHASE1:Mm9::chr3:59629633..59629644,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:59629633..59629644, +
1.65e-69FFCP PHASE1:Mm9::chr4:144155170..144155177,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Gm13124
1.65e-69FFCP PHASE1:Mm9::chr11:99957587..99957593,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Krt35
1.65e-69FFCP PHASE1:Mm9::chr3:93248889..93248897,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93248889..93248897, +
1.65e-69FFCP PHASE2:Mm9::chr3:93249466..93249478,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93249466..93249478, +
1.65e-69FFCP PHASE1:Mm9::chr3:93248697..93248704,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93248697..93248704, +
1.65e-69FFCP PHASE2:Mm9::chr3:93247460..93247471,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93247460..93247471, +
1.65e-69FFCP PHASE1:Mm9::chr14:21082655..21082682,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr14:21082655..21082682, -
1.65e-69FFCP PHASE1:Mm9::chrX:166374681..166374688,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chrX:166374681..166374688, +
1.65e-69FFCP PHASE1:Mm9::chr4:135527809..135527823,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p4@Lypla2
1.65e-69FFCP PHASE1:Mm9::chr8:63958211..63958219,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr8:63958211..63958219, +
1.65e-69FFCP PHASE1:Mm9::chr5:75107109..75107125,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr5:75107109..75107125, -
1.65e-69FFCP PHASE1:Mm9::chr3:93249140..93249149,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93249140..93249149, +
1.65e-69FFCP PHASE2:Mm9::chr4:144311356..144311370,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Gm13178
1.65e-69FFCP PHASE1:Mm9::chr4:144311356..144311370,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Gm13178
1.65e-69FFCP PHASE1:Mm9::chr18:20469239..20469258,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Dsg1a
1.65e-69FFCP PHASE2:Mm9::chr4:144155170..144155177,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Gm13124
1.65e-69FFCP PHASE1:Mm9::chr3:93247552..93247564,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93247552..93247564, +
1.65e-69FFCP PHASE1:Mm9::chr2:129949046..129949050,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Tgm6
1.65e-69FFCP PHASE2:Mm9::chr15:12444430..12444439,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr15:12444430..12444439, -
1.65e-69FFCP PHASE1:Mm9::chr16:56831979..56831988,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p13@Tmem45a
1.65e-69FFCP PHASE1:Mm9::chr3:93250018..93250027,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93250018..93250027, +
1.65e-69FFCP PHASE2:Mm9::chr1:46949977..46949981,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr1:46949977..46949981, -
1.65e-69FFCP PHASE2:Mm9::chr10:82296700..82296710,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p12@Txnrd1
1.65e-69FFCP PHASE2:Mm9::chr8:63958211..63958219,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr8:63958211..63958219, +
1.65e-69FFCP PHASE1:Mm9::chr19:59989963..59989986,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr19:59989963..59989986, -
1.65e-69FFCP PHASE1:Mm9::chr19:25196775..25196781,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr19:25196775..25196781, +
1.65e-69FFCP PHASE2:Mm9::chr3:93248889..93248897,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93248889..93248897, +
1.65e-69FFCP PHASE1:Mm9::chr11:115168521..115168541,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p1@Otop2
1.65e-69FFCP PHASE1:Mm9::chr17:14011908..14011919,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p13@Mllt4
1.65e-69FFCP PHASE1:Mm9::chr9:43876286..43876293,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr9:43876286..43876293, +
1.65e-69FFCP PHASE1:Mm9::chr10:82296700..82296710,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p12@Txnrd1
1.65e-69FFCP PHASE1:Mm9::chr3:93249391..93249400,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93249391..93249400, +

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