UBERON:0000055: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=compare with UBERON:0008782 | |comment=compare with UBERON:0008782 | ||
|created_by= | |created_by= | ||
| | |def="A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000055 | |||
|is_a=UBERON:0004111 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vessel | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=grouping_class | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:04, 12 September 2014
| Name: | vessel |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm] |
| Comments: | compare with UBERON:0008782 |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004111(anatomical conduit) |
|---|
Children
| is a: | UBERON:0001473 (lymphatic vessel),UBERON:0001981 (blood vessel),UBERON:0005985 (coronary vessel),UBERON:0010523 (microcirculatory vessel),FF:10727-110A7 (lymphangiectasia cell line:DS-1) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10727-110A7 (lymphangiectasia cell line:DS-1)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10727-110A7 (lymphangiectasia cell line:DS-1)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000055 (vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
