UBERON:0000161: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=in FMA, this is an anatomical conduit *space*, rather than anatomical conduit | |comment=in FMA, this is an anatomical conduit *space*, rather than anatomical conduit | ||
|created_by= | |created_by= | ||
| | |def="Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000161 | |||
|is_a=UBERON:0004111 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=orifice | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=upper_ontology_conflict | ||
| | |synonym="anatomical orifice" EXACT [FMA:3724];;"anatomical ostium" EXACT [FMA:3724];;"hilum" NARROW [] | ||
|union_of= | |||
|xref=FMA:3724;;SCTID:91837002 | |||
}} | }} |
Latest revision as of 17:07, 12 September 2014
Name: | orifice | |
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Namespace: | FANTOM | |
Definition: | "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724] | |
Xrefs: |
| |
Synonyms: |
"anatomical orifice" EXACT [FMA:3724] "anatomical ostium" EXACT [FMA:3724] "hilum" NARROW [] | |
Comments: | in FMA, this is an anatomical conduit *space*, rather than anatomical conduit | |
Subset: | upper_ontology_conflict |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004111(anatomical conduit) |
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Children
is a: | UBERON:0000166 (oral opening) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10512-107D8
- 10532-107G1
- 10537-107G6
- 10544-107H4 (oral squamous cell carcinoma cell line:SAS)
- 10545-107H5 (oral squamous cell carcinoma cell line:HSC-3)
... further results Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10199-103F1 (parotid gland, adult)
- 10202-103F4 (submaxillary gland, adult)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10512-107D8
- 10532-107G1
- 10537-107G6
- 10544-107H4 (oral squamous cell carcinoma cell line:SAS)
- 10545-107H5 (oral squamous cell carcinoma cell line:HSC-3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000161 (orifice), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data