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{{UBERON
{{UBERON
|id=UBERON:0000162
|name=cloaca
|namespace=
|def="Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
|xref=AAO:0000095;;GAID:1206;;MESH:A.13.223;;ncithesaurus:Cloaca;;SCTID:362857006;;VHOG:0001186;;WBbt:0005774;;XAO:0000244;;ZFA:0000330
|is_a=UBERON:0000077;;UBERON:0000161
|synonym="cloacal chamber" RELATED [];;"vent" RELATED []
|comment=Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]
|alt_id=
|alt_id=
|disjoint_from=
|comment=Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000162
|is_a=UBERON:0000481 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=cloaca
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001555;;UBERON:0004122
|part_of=UBERON:0001555;;UBERON:0004122
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string
|subset=
|synonym="cloacal chamber" RELATED [];;"vent" RELATED []
|union_of=
|xref=AAO:0000095;;GAID:1206;;MESH:A.13.223;;ncithesaurus:Cloaca;;SCTID:362857006;;TAO:0000330;;VHOG:0001186;;XAO:0000244;;ZFA:0000330
}}
}}

Latest revision as of 17:07, 12 September 2014

Name:cloaca
Namespace:FANTOM
Definition:"Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
Xrefs:
links:

AAO:0000095
GAID:1206
MESH:A.13.223
ncithesaurus:Cloaca
SCTID:362857006
TAO:0000330
VHOG:0001186
XAO:0000244

ZFA:0000330
Synonyms: "cloacal chamber" RELATED []
"vent" RELATED []
Comments:Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000481(multi-tissue structure),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0001555(digestive tract),UBERON:0004122(genitourinary system)



Children

is a:UBERON:0000163 (embryonic cloaca)
part of:UBERON:0012481 (cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000162 (cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.58e-44FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695p@chr1:132699659..132699668, +
4.58e-44FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695p@chr1:132699659..132699668, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9p@chr9:96425983..96425992, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304p3@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304p4@Fam115e
2.66e-39FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304p3@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304p4@C1rb
2.66e-39FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304p4@Fam115e
2.66e-39FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304p2@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304p@chr5:120136866..120136874, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567075..91567084, +
4.03e-30FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24p1@Msmb
4.03e-30FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24p3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24p3@Upk1a
4.03e-30FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24p1@Msmb
5.61e-30FFCP PHASE2:Mm9::chr2:36098306..36098309,+#_7a2b4c988cd60b838ccc465a634e33f1p5@Ptgs1
5.61e-30FFCP PHASE1:Mm9::chr7:55008002..55008008,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr7:55008002..55008008, -
5.61e-30FFCP PHASE2:Mm9::chr9:7867982..7867988,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:7867982..7867988, -
5.61e-30FFCP PHASE1:Mm9::chr1:37769602..37769611,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr1:37769602..37769611, -
5.61e-30FFCP PHASE1:Mm9::chr12:93026806..93026816,-#_7a2b4c988cd60b838ccc465a634e33f1p12@Ston2
5.61e-30FFCP PHASE2:Mm9::chr2:137020090..137020093,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr2:137020090..137020093, +
5.61e-30FFCP PHASE2:Mm9::chr9:122970758..122970759,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:122970758..122970759, +
5.61e-30FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr11:89595040..89595050, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535901..42535907,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42535901..42535907, -
5.61e-30FFCP PHASE2:Mm9::chr6:22342065..22342073,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:22342065..22342073, -
5.61e-30FFCP PHASE2:Mm9::chr6:42535901..42535907,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42535901..42535907, -
5.61e-30FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr14:68331267..68331286, -
5.61e-30FFCP PHASE2:Mm9::chr6:134172953..134172958,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:134172953..134172958, +
5.61e-30FFCP PHASE1:Mm9::chr6:42551847..42551862,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42551847..42551862, -
5.61e-30FFCP PHASE2:Mm9::chr1:73048139..73048141,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr1:73048139..73048141, +
5.61e-30FFCP PHASE2:Mm9::chr6:42547300..42547314,-#_7a2b4c988cd60b838ccc465a634e33f1p7@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr7:55008002..55008008,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr7:55008002..55008008, -
5.61e-30FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr14:29722238..29722242, -
5.61e-30FFCP PHASE2:Mm9::chr6:57789909..57789916,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:57789909..57789916, -
5.61e-30FFCP PHASE2:Mm9::chr6:42548119..42548136,-#_7a2b4c988cd60b838ccc465a634e33f1p12@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr15:101506516..101506534,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr15:101506516..101506534, -
5.61e-30FFCP PHASE1:Mm9::chr7:123747566..123747567,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr7:123747566..123747567, +
5.61e-30FFCP PHASE2:Mm9::chr11:57320631..57320636,-#_7a2b4c988cd60b838ccc465a634e33f1p5@Fam114a2
5.61e-30FFCP PHASE1:Mm9::chr5:86802562..86802592,-#_7a2b4c988cd60b838ccc465a634e33f1p6@Tmprss11d
5.61e-30FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr10:61188929..61188936, +
5.61e-30FFCP PHASE1:Mm9::chr3:95514619..95514622,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr3:95514619..95514622, -
5.61e-30FFCP PHASE1:Mm9::chr15:101506878..101506897,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr15:101506878..101506897, -
5.61e-30FFCP PHASE1:Mm9::chr6:42536009..42536044,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42536009..42536044, +
5.61e-30FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr12:80992302..80992309, +
5.61e-30FFCP PHASE2:Mm9::chr4:122366201..122366206,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr4:122366201..122366206, -
5.61e-30FFCP PHASE1:Mm9::chr5:33251992..33251995,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr5:33251992..33251995, +
5.61e-30FFCP PHASE1:Mm9::chr18:64859665..64859669,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr18:64859665..64859669, +
5.61e-30FFCP PHASE1:Mm9::chr16:20186645..20186650,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr16:20186645..20186650, +
5.61e-30FFCP PHASE2:Mm9::chr6:42536009..42536044,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42536009..42536044, +
5.61e-30FFCP PHASE1:Mm9::chr9:122970904..122970907,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:122970904..122970907, -
5.61e-30FFCP PHASE2:Mm9::chr11:100108943..100108977,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr11:100108943..100108977, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535739..42535752,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42535739..42535752, -
5.61e-30FFCP PHASE2:Mm9::chr6:42535739..42535752,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42535739..42535752, -
5.61e-30FFCP PHASE2:Mm9::chr9:36300946..36300953,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:36300946..36300953, -
5.61e-30FFCP PHASE1:Mm9::chr6:42547830..42547837,-#_7a2b4c988cd60b838ccc465a634e33f1p8@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr1:72981474..72981498,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr1:72981474..72981498, +
5.61e-30FFCP PHASE2:Mm9::chr6:42543450..42543455,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42543450..42543455, -
5.61e-30FFCP PHASE2:Mm9::chr11:100065595..100065616,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr11:100065595..100065616, -
5.61e-30FFCP PHASE1:Mm9::chr6:54242736..54242738,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:54242736..54242738, -
5.61e-30FFCP PHASE1:Mm9::chr6:134172953..134172958,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:134172953..134172958, +
5.61e-30FFCP PHASE1:Mm9::chr6:42539787..42539797,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42539787..42539797, -
5.61e-30FFCP PHASE2:Mm9::chr16:20186645..20186650,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr16:20186645..20186650, +
5.61e-30FFCP PHASE1:Mm9::chrX:137642090..137642093,-#_7a2b4c988cd60b838ccc465a634e33f1p8@Col4a6
5.61e-30FFCP PHASE1:Mm9::chr6:42547375..42547383,-#_7a2b4c988cd60b838ccc465a634e33f1p10@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr6:42539787..42539797,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42539787..42539797, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000162&oldid=3277080"