Personal tools

UBERON:0000307: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000307
|alt_id=UBERON:0007011;;UBERON:BTO_0000128-FMA_83041
|name=blastula
|namespace=
|def="Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
|xref=BILA:0000059;;BTO:0000128;;GAID:1294;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png;;MESH:A.16.254.270.274;;OGEM:000006;;OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
|is_a=UBERON:0000922
|synonym="blastosphere" RELATED [Wikipedia:Blastula];;"blastula embryo" EXACT [BILA:0000059]
|comment=TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula
|comment=TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula
|alt_id=UBERON:0007011;;UBERON:BTO_0000128-FMA_83041
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
|subset=inconsistent_with_fma
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0007010
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000307
|is_a=UBERON:0000922
|is_obsolete=
|located_in=
|located_in=
|name=blastula
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=inconsistent_with_fma
|preceded_by=
|synonym="blastosphere" RELATED [Wikipedia:Blastula];;"blastula embryo" EXACT [BILA:0000059]
|union_of=
|xref=BILA:0000059;;BTO:0000128;;GAID:1294;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png;;MESH:A.16.254.270.274;;OGEM:000006;;OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:blastula
Namespace:FANTOM
Definition:"Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
Xrefs:
links:

BILA:0000059
BTO:0000128
GAID:1294
[ 200px-Blastulation.png 200px-Blastulation.png]
MESH:A.16.254.270.274
OGEM:000006

OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
Synonyms: "blastosphere" RELATED [Wikipedia:Blastula]
"blastula embryo" EXACT [BILA:0000059]
Comments:TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula
Alt_id: UBERON:0007011
UBERON:BTO_0000128-FMA_83041
Subset: inconsistent_with_fma

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000922(embryo)
develops_from:UBERON:0007010(cleaving embryo)



Children

develops from:UBERON:0004734 (gastrula)
part of:UBERON:0000358 (blastocyst),UBERON:0006595 (presumptive endoderm),UBERON:0006601 (presumptive ectoderm),UBERON:0006603 (presumptive mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000307 (blastula), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr9:114472387..114472401, -
1.58e-86FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr2:10444938..10444948, +
1.58e-86FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr16:66852878..66852880, +
1.58e-86FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr16:66852878..66852880, +
1.58e-86FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr11:114739327..114739352, +
1.58e-86FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr13:109236868..109236869, +
1.58e-86FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr17:66833174..66833180, -
1.58e-86FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr16:44262965..44262975, -
1.58e-86FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr1:174143295..174143309, -
1.58e-86FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_be7f5f10d8c4dd3e3126e2d72180995ep2@Triml2
1.58e-86FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr9:114472387..114472401, -
1.58e-86FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr3:51025125..51025133, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_be7f5f10d8c4dd3e3126e2d72180995ep14@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr19:53750863..53750906, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_be7f5f10d8c4dd3e3126e2d72180995ep6@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr7:92689753..92689757, -
1.58e-86FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr13:68409910..68409914, +
1.58e-86FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr9:122510273..122510281, +
1.58e-86FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr11:78698925..78698930, +
1.58e-86FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_be7f5f10d8c4dd3e3126e2d72180995ep2@Lin28a
1.58e-86FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_be7f5f10d8c4dd3e3126e2d72180995ep11@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_be7f5f10d8c4dd3e3126e2d72180995ep14@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr16:44262965..44262975, -
1.58e-86FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr8:28338006..28338016, -
1.58e-86FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr13:68409910..68409914, +
1.58e-86FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr4:9880126..9880128, +
1.58e-86FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_be7f5f10d8c4dd3e3126e2d72180995ep4@Zfp42
1.58e-86FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr12:87810964..87810976, -
1.58e-86FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_be7f5f10d8c4dd3e3126e2d72180995ep4@Ngfrap1
1.58e-86FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr17:6988793..6988807, -
1.58e-86FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr7:92689753..92689757, -
1.58e-86FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_be7f5f10d8c4dd3e3126e2d72180995ep6@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_be7f5f10d8c4dd3e3126e2d72180995ep1@Rhox6
1.58e-86FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr9:122510273..122510281, +
1.58e-86FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr13:109236868..109236869, +
1.58e-86FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr11:78698925..78698930, +
1.58e-86FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr8:28338006..28338016, -
1.58e-86FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_be7f5f10d8c4dd3e3126e2d72180995ep7@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_be7f5f10d8c4dd3e3126e2d72180995ep11@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr17:66833174..66833180, -
1.58e-86FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chrX:135868788..135868795, +
1.58e-86FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr11:114739327..114739352, +
1.58e-86FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr2:10444938..10444948, +
1.58e-86FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chrX:22692718..22692721, +
1.58e-86FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_be7f5f10d8c4dd3e3126e2d72180995ep2@Triml2
1.58e-86FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr9:59378043..59378047, -
1.58e-86FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr3:51025125..51025133, +
1.58e-86FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr4:9880126..9880128, +
1.58e-86FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_be7f5f10d8c4dd3e3126e2d72180995ep1@Rhox6
1.58e-86FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr9:59378043..59378047, -
1.58e-86FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_be7f5f10d8c4dd3e3126e2d72180995ep4@Zfp42
1.58e-86FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr1:174143295..174143309, -
1.58e-86FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_be7f5f10d8c4dd3e3126e2d72180995ep4@Ngfrap1
1.58e-86FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chr19:53750863..53750906, +
1.58e-86FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chrX:135868788..135868795, +
1.58e-86FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_be7f5f10d8c4dd3e3126e2d72180995ep7@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr17:6988793..6988807, -
1.58e-86FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_be7f5f10d8c4dd3e3126e2d72180995ep2@Lin28a
1.58e-86FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_be7f5f10d8c4dd3e3126e2d72180995ep@chrX:22692718..22692721, +
1.58e-86FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_be7f5f10d8c4dd3e3126e2d72180995ep@chr12:87810964..87810976, -
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_60a1e30aa229218b1e4231b3fe83c3dap@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_60a1e30aa229218b1e4231b3fe83c3dap@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_60a1e30aa229218b1e4231b3fe83c3dap@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_60a1e30aa229218b1e4231b3fe83c3dap@chr10:120921270..120921282, -
1.33e-65FFCP PHASE2:Mm9::chr9:114472360..114472371,-#_a28ebce25842097f7711d81fbb1ca8cfp@chr9:114472360..114472371, -
1.33e-65FFCP PHASE2:Mm9::chr9:118387933..118387942,+#_a28ebce25842097f7711d81fbb1ca8cfp4@Eomes
1.33e-65FFCP PHASE1:Mm9::chr2:155572913..155572925,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr2:155572913..155572925, +
1.33e-65FFCP PHASE1:Mm9::chr8:44392345..44392363,-#_a28ebce25842097f7711d81fbb1ca8cfp1@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr9:118387933..118387942,+#_a28ebce25842097f7711d81fbb1ca8cfp4@Eomes
1.33e-65FFCP PHASE1:Mm9::chr14:55557416..55557422,+#_a28ebce25842097f7711d81fbb1ca8cfp13@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr13:120218522..120218537,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr13:120218522..120218537, +
1.33e-65FFCP PHASE2:Mm9::chr5:66542571..66542582,-#_a28ebce25842097f7711d81fbb1ca8cfp13@Rbm47
1.33e-65FFCP PHASE2:Mm9::chr2:155572913..155572925,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr2:155572913..155572925, +
1.33e-65FFCP PHASE1:Mm9::chr5:30062362..30062371,+#_a28ebce25842097f7711d81fbb1ca8cfp6@Dnajb6
1.33e-65FFCP PHASE2:Mm9::chr16:53576572..53576579,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr16:53576572..53576579, +
1.33e-65FFCP PHASE2:Mm9::chr8:44392404..44392412,-#_a28ebce25842097f7711d81fbb1ca8cfp3@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr8:109128151..109128162,+#_a28ebce25842097f7711d81fbb1ca8cfp5@Cdh1
1.33e-65FFCP PHASE1:Mm9::chr13:120218522..120218537,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr13:120218522..120218537, +
1.33e-65FFCP PHASE2:Mm9::chr2:172371713..172371724,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr2:172371713..172371724, +
1.33e-65FFCP PHASE2:Mm9::chr5:30062362..30062371,+#_a28ebce25842097f7711d81fbb1ca8cfp6@Dnajb6
1.33e-65FFCP PHASE1:Mm9::chr1:174143273..174143293,-#_a28ebce25842097f7711d81fbb1ca8cfp@chr1:174143273..174143293, -
1.33e-65FFCP PHASE1:Mm9::chr5:66542571..66542582,-#_a28ebce25842097f7711d81fbb1ca8cfp13@Rbm47
1.33e-65FFCP PHASE2:Mm9::chr8:44392345..44392363,-#_a28ebce25842097f7711d81fbb1ca8cfp1@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr8:44392404..44392412,-#_a28ebce25842097f7711d81fbb1ca8cfp3@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr9:114472360..114472371,-#_a28ebce25842097f7711d81fbb1ca8cfp@chr9:114472360..114472371, -
1.33e-65FFCP PHASE1:Mm9::chr16:53576572..53576579,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr16:53576572..53576579, +
1.33e-65FFCP PHASE1:Mm9::chr2:172371713..172371724,+#_a28ebce25842097f7711d81fbb1ca8cfp@chr2:172371713..172371724, +
1.33e-65FFCP PHASE2:Mm9::chr14:55557416..55557422,+#_a28ebce25842097f7711d81fbb1ca8cfp13@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr1:174143273..174143293,-#_a28ebce25842097f7711d81fbb1ca8cfp@chr1:174143273..174143293, -
1.33e-65FFCP PHASE2:Mm9::chr8:109128151..109128162,+#_a28ebce25842097f7711d81fbb1ca8cfp5@Cdh1
2.21e-65FFCP PHASE2:Mm9::chr2:122084320..122084337,+#_6dfbebcf88351db863a94dfd13367d3bp@chr2:122084320..122084337, +
2.21e-65FFCP PHASE2:Mm9::chrX:132804817..132804822,+#_6dfbebcf88351db863a94dfd13367d3bp5@Ngfrap1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000307&oldid=3277094"