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{{UBERON
{{UBERON
|id=UBERON:0001560
|alt_id=UBERON:FMA_45733-MA_0000589
|name=neck of organ
|namespace=
|def=
|xref=FMA:45733
|is_a=UBERON:0000064
|synonym="organ neck" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_45733-MA_0000589
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001560
|is_a=UBERON:0000064
|is_obsolete=
|located_in=
|located_in=
|name=neck of organ
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="organ neck" EXACT []
|union_of=
|xref=FMA:45733
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:neck of organ
Namespace:FANTOM
Xrefs:
links:
FMA:45733
Synonyms: "organ neck" EXACT []
Alt_id: UBERON:FMA_45733-MA_0000589

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0000002 (uterine cervix)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001560 (neck of organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.22e-44FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93fp5@TDRD9
1.22e-44FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93fp5@TDRD9
4.27e-34FFCP PHASE2:Hg19::chr6:49467646..49467657,+#_c0293cf5db285ab44302650b127d8d1cp1@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr8:41508303..41508308,-#_c0293cf5db285ab44302650b127d8d1cp2@NKX6-3
4.27e-34FFCP PHASE1:Hg19::chr7:150871938..150871949,-#_c0293cf5db285ab44302650b127d8d1cp3@GBX1
4.27e-34FFCP PHASE2:Hg19::chr17:79225428..79225433,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:79225428..79225433, -
4.27e-34FFCP PHASE2:Hg19::chr8:41485173..41485181,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485173..41485181, -
4.27e-34FFCP PHASE1:Hg19::chr3:187008638..187008641,+#_c0293cf5db285ab44302650b127d8d1cp10@ENST00000541007, p6@uc003frl.2
4.27e-34FFCP PHASE2:Hg19::chr20:20392704..20392711,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:20392704..20392711, -
4.27e-34FFCP PHASE1:Hg19::chr8:121056304..121056311,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121056304..121056311, -
4.27e-34FFCP PHASE1:Hg19::chr20:45400010..45400026,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:45400010..45400026, -
4.27e-34FFCP PHASE2:Hg19::chr7:57928958..57928964,-#_c0293cf5db285ab44302650b127d8d1cp@chr7:57928958..57928964, -
4.27e-34FFCP PHASE2:Hg19::chr11:2436040..2436051,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436040..2436051, -
4.27e-34FFCP PHASE1:Hg19::chr8:33464773..33464782,+#_c0293cf5db285ab44302650b127d8d1cp@chr8:33464773..33464782, +
4.27e-34FFCP PHASE1:Hg19::chr7:127258120..127258138,-#_c0293cf5db285ab44302650b127d8d1cp3@PAX4
4.27e-34FFCP PHASE1:Hg19::chr2:9059355..9059366,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:9059355..9059366, -
4.27e-34FFCP PHASE1:Hg19::chr10:62030084..62030091,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:62030084..62030091, -
4.27e-34FFCP PHASE2:Hg19::chr9:35237473..35237478,+#_c0293cf5db285ab44302650b127d8d1cp@chr9:35237473..35237478, +
4.27e-34FFCP PHASE1:Hg19::chr6:152084846..152084856,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:152084846..152084856, +
4.27e-34FFCP PHASE1:Hg19::chr19:7184803..7184814,-#_c0293cf5db285ab44302650b127d8d1cp@chr19:7184803..7184814, -
4.27e-34FFCP PHASE1:Hg19::chr6:39290815..39290820,-#_c0293cf5db285ab44302650b127d8d1cp6@KCNK16
4.27e-34FFCP PHASE1:Hg19::chr2:182546258..182546267,+#_c0293cf5db285ab44302650b127d8d1cp@chr2:182546258..182546267, +
4.27e-34FFCP PHASE1:Hg19::chr17:39755914..39755961,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:39755914..39755961, -
4.27e-34FFCP PHASE1:Hg19::chr11:79742692..79742706,+#_c0293cf5db285ab44302650b127d8d1cp@chr11:79742692..79742706, +
4.27e-34FFCP PHASE2:Hg19::chr17:26911596..26911605,-#_c0293cf5db285ab44302650b127d8d1cp8@SPAG5
4.27e-34FFCP PHASE2:Hg19::chr12:14849414..14849417,-#_c0293cf5db285ab44302650b127d8d1cp8@GUCY2C
4.27e-34FFCP PHASE2:Hg19::chr22:47425875..47425879,-#_c0293cf5db285ab44302650b127d8d1cp@chr22:47425875..47425879, -
4.27e-34FFCP PHASE2:Hg19::chr20:21918450..21918454,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918450..21918454, +
4.27e-34FFCP PHASE1:Hg19::chr12:131117147..131117158,-#_c0293cf5db285ab44302650b127d8d1cp@chr12:131117147..131117158, -
4.27e-34FFCP PHASE2:Hg19::chr10:62029969..62029974,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:62029969..62029974, -
4.27e-34FFCP PHASE1:Hg19::chr6:25661559..25661563,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:25661559..25661563, +
4.27e-34FFCP PHASE2:Hg19::chr22:44377129..44377137,+#_c0293cf5db285ab44302650b127d8d1cp@chr22:44377129..44377137, +
4.27e-34FFCP PHASE1:Hg19::chr8:121066549..121066554,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121066549..121066554, -
4.27e-34FFCP PHASE1:Hg19::chr8:41485173..41485181,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485173..41485181, -
4.27e-34FFCP PHASE1:Hg19::chr20:20392704..20392711,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:20392704..20392711, -
4.27e-34FFCP PHASE2:Hg19::chr2:9059377..9059382,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:9059377..9059382, -
4.27e-34FFCP PHASE1:Hg19::chr11:2436040..2436051,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436040..2436051, -
4.27e-34FFCP PHASE2:Hg19::chr6:152084870..152084873,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:152084870..152084873, +
4.27e-34FFCP PHASE2:Hg19::chr19:7184828..7184838,-#_c0293cf5db285ab44302650b127d8d1cp@chr19:7184828..7184838, -
4.27e-34FFCP PHASE1:Hg19::chr6:49467646..49467657,+#_c0293cf5db285ab44302650b127d8d1cp1@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr11:2428348..2428358,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2428348..2428358, -
4.27e-34FFCP PHASE2:Hg19::chr8:121056549..121056554,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121056549..121056554, -
4.27e-34FFCP PHASE2:Hg19::chr1:70826186..70826193,-#_c0293cf5db285ab44302650b127d8d1cp4@ENST00000413943
4.27e-34FFCP PHASE2:Hg19::chr8:80963666..80963669,-#_c0293cf5db285ab44302650b127d8d1cp37@TPD52
4.27e-34FFCP PHASE1:Hg19::chr9:35237473..35237478,+#_c0293cf5db285ab44302650b127d8d1cp@chr9:35237473..35237478, +
4.27e-34FFCP PHASE1:Hg19::chr5:40984132..40984133,+#_c0293cf5db285ab44302650b127d8d1cp@chr5:40984132..40984133, +
4.27e-34FFCP PHASE2:Hg19::chr20:2361545..2361557,+#_c0293cf5db285ab44302650b127d8d1cp1@TGM6
4.27e-34FFCP PHASE2:Hg19::chr18:74350663..74350688,-#_c0293cf5db285ab44302650b127d8d1cp@chr18:74350663..74350688, -
4.27e-34FFCP PHASE1:Hg19::chr12:14849414..14849417,-#_c0293cf5db285ab44302650b127d8d1cp8@GUCY2C
4.27e-34FFCP PHASE1:Hg19::chr22:47425875..47425879,-#_c0293cf5db285ab44302650b127d8d1cp@chr22:47425875..47425879, -
4.27e-34FFCP PHASE2:Hg19::chr4:4501551..4501558,-#_c0293cf5db285ab44302650b127d8d1cp@chr4:4501551..4501558, -
4.27e-34FFCP PHASE2:Hg19::chr12:131117194..131117202,-#_c0293cf5db285ab44302650b127d8d1cp@chr12:131117194..131117202, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918450..21918454,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918450..21918454, +
4.27e-34FFCP PHASE1:Hg19::chr17:26911596..26911605,-#_c0293cf5db285ab44302650b127d8d1cp8@SPAG5
4.27e-34FFCP PHASE2:Hg19::chr6:49467678..49467693,+#_c0293cf5db285ab44302650b127d8d1cp2@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr1:207193762..207193766,+#_c0293cf5db285ab44302650b127d8d1cp@chr1:207193762..207193766, +
4.27e-34FFCP PHASE1:Hg19::chr22:44377129..44377137,+#_c0293cf5db285ab44302650b127d8d1cp@chr22:44377129..44377137, +
4.27e-34FFCP PHASE2:Hg19::chr4:163124750..163124764,-#_c0293cf5db285ab44302650b127d8d1cp@chr4:163124750..163124764, -
4.27e-34FFCP PHASE2:Hg19::chr8:41485201..41485208,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485201..41485208, -
4.27e-34FFCP PHASE1:Hg19::chr8:121056349..121056360,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121056349..121056360, -
4.27e-34FFCP PHASE2:Hg19::chr11:2436082..2436085,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436082..2436085, -
4.27e-34FFCP PHASE2:Hg19::chr5:160356414..160356417,-#_c0293cf5db285ab44302650b127d8d1cp@chr5:160356414..160356417, -
4.27e-34FFCP PHASE1:Hg19::chr2:9059377..9059382,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:9059377..9059382, -
4.27e-34FFCP PHASE2:Hg19::chr10:18689637..18689645,+#_c0293cf5db285ab44302650b127d8d1cp28@CACNB2
4.27e-34FFCP PHASE1:Hg19::chr6:152084870..152084873,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:152084870..152084873, +
4.27e-34FFCP PHASE1:Hg19::chr19:7184828..7184838,-#_c0293cf5db285ab44302650b127d8d1cp@chr19:7184828..7184838, -
4.27e-34FFCP PHASE2:Hg19::chr8:22001308..22001310,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:22001308..22001310, -
4.27e-34FFCP PHASE2:Hg19::chr21:47588743..47588750,-#_c0293cf5db285ab44302650b127d8d1cp9@C21orf56
4.27e-34FFCP PHASE1:Hg19::chr11:2428348..2428358,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2428348..2428358, -
4.27e-34FFCP PHASE2:Hg19::chr3:55205086..55205090,-#_c0293cf5db285ab44302650b127d8d1cp@chr3:55205086..55205090, -
4.27e-34FFCP PHASE1:Hg19::chr1:70826186..70826193,-#_c0293cf5db285ab44302650b127d8d1cp4@ENST00000413943
4.27e-34FFCP PHASE2:Hg19::chr17:27892902..27892907,+#_c0293cf5db285ab44302650b127d8d1cp@chr17:27892902..27892907, +
4.27e-34FFCP PHASE1:Hg19::chr8:80963666..80963669,-#_c0293cf5db285ab44302650b127d8d1cp37@TPD52
4.27e-34FFCP PHASE1:Hg19::chr7:57928958..57928964,-#_c0293cf5db285ab44302650b127d8d1cp@chr7:57928958..57928964, -
4.27e-34FFCP PHASE1:Hg19::chr20:2361545..2361557,+#_c0293cf5db285ab44302650b127d8d1cp1@TGM6
4.27e-34FFCP PHASE2:Hg19::chr20:21918470..21918480,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918470..21918480, +
4.27e-34FFCP PHASE2:Hg19::chr1:153371709..153371712,-#_c0293cf5db285ab44302650b127d8d1cp@chr1:153371709..153371712, -
4.27e-34FFCP PHASE1:Hg19::chr17:79225428..79225433,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:79225428..79225433, -
4.27e-34FFCP PHASE1:Hg19::chr4:4501551..4501558,-#_c0293cf5db285ab44302650b127d8d1cp@chr4:4501551..4501558, -
4.27e-34FFCP PHASE1:Hg19::chr14:23465559..23465575,-#_c0293cf5db285ab44302650b127d8d1cp@chr14:23465559..23465575, -
4.27e-34FFCP PHASE1:Hg19::chr12:131117194..131117202,-#_c0293cf5db285ab44302650b127d8d1cp@chr12:131117194..131117202, -
4.27e-34FFCP PHASE2:Hg19::chr10:99550654..99550658,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:99550654..99550658, -
4.27e-34FFCP PHASE1:Hg19::chr18:74350663..74350688,-#_c0293cf5db285ab44302650b127d8d1cp@chr18:74350663..74350688, -
4.27e-34FFCP PHASE2:Hg19::chr20:43726566..43726571,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:43726566..43726571, +
4.27e-34FFCP PHASE1:Hg19::chr8:41485201..41485208,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485201..41485208, -
4.27e-34FFCP PHASE2:Hg19::chr8:41484957..41484961,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41484957..41484961, -
4.27e-34FFCP PHASE2:Hg19::chr7:127258190..127258201,-#_c0293cf5db285ab44302650b127d8d1cp2@PAX4
4.27e-34FFCP PHASE1:Hg19::chr11:2436082..2436085,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436082..2436085, -
4.27e-34FFCP PHASE2:Hg19::chr6:152084876..152084885,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:152084876..152084885, +
4.27e-34FFCP PHASE1:Hg19::chr6:49467678..49467693,+#_c0293cf5db285ab44302650b127d8d1cp2@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr3:181432833..181432842,+#_c0293cf5db285ab44302650b127d8d1cp@chr3:181432833..181432842, +
4.27e-34FFCP PHASE1:Hg19::chr4:163124750..163124764,-#_c0293cf5db285ab44302650b127d8d1cp@chr4:163124750..163124764, -
4.27e-34FFCP PHASE1:Hg19::chr8:22001308..22001310,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:22001308..22001310, -
4.27e-34FFCP PHASE1:Hg19::chr21:47588743..47588750,-#_c0293cf5db285ab44302650b127d8d1cp9@C21orf56
4.27e-34FFCP PHASE1:Hg19::chr10:62029969..62029974,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:62029969..62029974, -
4.27e-34FFCP PHASE2:Hg19::chr8:121058540..121058543,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121058540..121058543, -
4.27e-34FFCP PHASE2:Hg19::chr19:16838056..16838070,+#_c0293cf5db285ab44302650b127d8d1cp@chr19:16838056..16838070, +
4.27e-34FFCP PHASE2:Hg19::chr17:32314322..32314327,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:32314322..32314327, -
4.27e-34FFCP PHASE2:Hg19::chr2:182548440..182548448,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:182548440..182548448, -
4.27e-34FFCP PHASE2:Hg19::chr14:23465559..23465575,-#_c0293cf5db285ab44302650b127d8d1cp@chr14:23465559..23465575, -

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