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{{UBERON
{{UBERON
|id=UBERON:0001690
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|name=ear
|anatomical_img_id=FMA:52780
|namespace=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
|is_a=UBERON:0000020;;UBERON:0010314
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001690
|is_a=UBERON:0000020 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=ear
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0002105
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim;;uberon_slim
|preceded_by=
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|union_of=
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data