UBERON:0001737: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0008947 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001737 | |||
|is_a=UBERON:0000477 ;;UBERON:0004119 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=larynx | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000065 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string | ||
| | |subset=uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=AAO:0000268;;BTO:0001208;;EFO:0000838;;EHDAA2:0004063;;EMAPA:18333;;EV:0100039;;FMA:55097;;GAID:108;;galen:Larynx;;http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg;;MA:0000414;;MAT:0000187;;MESH:A.04.329;;MIAA:0000187;;ncithesaurus:Larynx;;OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA;;SCTID:181212004;;VHOG:0001279;;XAO:0003081 | |||
}} | }} | ||
Latest revision as of 17:20, 12 September 2014
| Name: | larynx | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx] | |
| Xrefs: |
| |
| Comments: | This class was created automatically from a combination of ontologies | |
| Alt_id: | UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0004119(endoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0008947(respiratory primordium) |
| part_of: | UBERON:0000065(respiratory tract) |
Children
| derives from: | FF:0104978 (HEp-2 cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
- 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
- 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
- 11893-125E3
- 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
- 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
- 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
- 11897-125E7
- 11898-125E8 (Hep-2 cells mock treated, biol_rep1)
- 11899-125E9 (Hep-2 cells mock treated, biol_rep2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001737 (larynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
